RNA–Protein interactions for RNA: ENST00000393091.6

USP44-202, Transcript of ubiquitin specific peptidase 44, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP44, Length 3,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP44-202ENST00000393091 SMRP1Q8NCR6 262 aa14□□□□□ -0.17
USP44-202ENST00000393091 TRIM11Q96F44 468 aa14□□□□□ -0.17
USP44-202ENST00000393091 TRIM62Q9BVG3 475 aa14□□□□□ -0.17
USP44-202ENST00000393091 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14□□□□□ -0.17
USP44-202ENST00000393091 WDR35Q9P2L0 1181 aa14□□□□□ -0.17
USP44-202ENST00000393091 F11P03951 625 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 CFHP08603 1231 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 ALDH1A3P47895 512 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 CYP27A1Q02318 531 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 EIF4EBP2Q13542 120 aaPredicted RBP13.99□□□□□ -0.17
USP44-202ENST00000393091 CCDC142Q17RM4 750 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 LEXMQ3ZCV2 418 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 PPP1R15BQ5SWA1 713 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 MICAL1Q8TDZ2 1067 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 ZNHIT6Q9NWK9 470 aaKnown RBP13.99□□□□□ -0.17
USP44-202ENST00000393091 CLIC5Q9NZA1 410 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 LCMT1Q9UIC8 334 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 EIF3CLB5ME19 914 aaKnown RBP13.99□□□□□ -0.17
USP44-202ENST00000393091 SART1O43290 800 aaKnown RBP13.99□□□□□ -0.17
USP44-202ENST00000393091 TBX10O75333 385 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 ELF1P32519 619 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 HADHBP55084 474 aaKnown RBP13.99□□□□□ -0.17
USP44-202ENST00000393091 CCDC173Q0VFZ6 552 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 ZNF394Q53GI3 561 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 PPM1LQ5SGD2 360 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 LIN9Q5TKA1 542 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 TMEM150AQ86TG1 271 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 TTC9BQ8N6N2 239 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 EIF3CQ99613 913 aaKnown RBP13.99□□□□□ -0.17
USP44-202ENST00000393091 TRPV4Q9HBA0 871 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 FAM49BQ9NUQ9 324 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 ABI2Q9NYB9 513 aaPredicted RBP13.99□□□□□ -0.17
USP44-202ENST00000393091 M0QYV0 167 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 MTA2O94776 668 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 ERBB2P04626 1255 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 PTPN2P17706 415 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 TWF1Q12792 350 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 PTPN21Q16825 1174 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 PMF1Q6P1K2 205 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 PIGZQ86VD9 579 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 PALB2Q86YC2 1186 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 SLC7A14Q8TBB6 771 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 NECTIN4Q96NY8 510 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 CYP4F11Q9HBI6 524 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 STRIP2Q9ULQ0 834 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 CEP83Q9Y592 693 aa13.99□□□□□ -0.17
USP44-202ENST00000393091 ORC1Q13415 861 aa13.98□□□□□ -0.17
USP44-202ENST00000393091 MSANTD2Q6P1R3 559 aa13.98□□□□□ -0.17
USP44-202ENST00000393091 VPS36Q86VN1 386 aa13.98□□□□□ -0.17
USP44-202ENST00000393091 MSANTD4Q8NCY6 345 aa13.98□□□□□ -0.17
USP44-202ENST00000393091 UBE2Q2Q8WVN8 375 aa13.98□□□□□ -0.17
USP44-202ENST00000393091 MYLIPQ8WY64 445 aa13.98□□□□□ -0.17
USP44-202ENST00000393091 NOX5Q96PH1 765 aa13.98□□□□□ -0.17
USP44-202ENST00000393091 SLC2A13Q96QE2 648 aa13.98□□□□□ -0.17
USP44-202ENST00000393091 CDK5RAP1Q96SZ6 601 aaKnown RBP13.98□□□□□ -0.17
USP44-202ENST00000393091 MED10Q9BTT4 135 aa13.98□□□□□ -0.17
USP44-202ENST00000393091 KCND1Q9NSA2 647 aa13.98□□□□□ -0.17
USP44-202ENST00000393091 RANBP2P49792 3224 aaKnown RBP13.98□□□□□ -0.17
USP44-202ENST00000393091 CALB1P05937 261 aa13.98□□□□□ -0.17
USP44-202ENST00000393091 SLC5A3P53794 718 aa13.98□□□□□ -0.17
USP44-202ENST00000393091 ADKP55263 362 aaKnown RBP13.98□□□□□ -0.17
USP44-202ENST00000393091 NT5C3BQ969T7 300 aa13.98□□□□□ -0.17
USP44-202ENST00000393091 NHEJ1Q9H9Q4 299 aaPredicted RBP13.98□□□□□ -0.17
USP44-202ENST00000393091 WDR6Q9NNW5 1121 aaKnown RBP13.98□□□□□ -0.17
USP44-202ENST00000393091 ACP6Q9NPH0 428 aa13.98□□□□□ -0.17
USP44-202ENST00000393091 NAGPAQ9UK23 515 aa13.98□□□□□ -0.17
USP44-202ENST00000393091 F8VP50 259 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 MOSPD3O75425 235 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 CD19P15391 556 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 MTHFRP42898 656 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 NNTQ13423 1086 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 SMAD4Q13485 552 aaKnown RBP13.97□□□□□ -0.17
USP44-202ENST00000393091 VEPH1Q14D04 833 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 PABPC1LQ4VXU2 614 aaKnown RBP13.97□□□□□ -0.17
USP44-202ENST00000393091 OLFML1Q6UWY5 402 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 DENND5BQ6ZUT9 1274 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 SLC26A9Q7LBE3 791 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 PPP1R13BQ96KQ4 1090 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 KCNK16Q96T55 309 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 PRRG1O14668 218 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 LINC01565O15544 149 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 TADA3O75528 432 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 LRG1P02750 347 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 ADORA2BP29275 332 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 CDC25CP30307 473 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 GRIK1P39086 918 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 MAP3K7CLP57077 242 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 DAOAP59103 153 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 TSR1Q2NL82 804 aaKnown RBP13.97□□□□□ -0.17
USP44-202ENST00000393091 PLEKHA7Q6IQ23 1121 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 DNAJB7Q7Z6W7 309 aaPredicted RBP13.97□□□□□ -0.17
USP44-202ENST00000393091 XYLT1Q86Y38 959 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 LRRC8AQ8IWT6 810 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 ELMOD1Q8N336 334 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 KHSRPQ92945 711 aaKnown RBP eCLIP13.97□□□□□ -0.17
USP44-202ENST00000393091 PGAP3Q96FM1 320 aaPredicted RBP13.97□□□□□ -0.17
USP44-202ENST00000393091 ZNF197O14709 1029 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 PJA2O43164 708 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 CYP1A2P05177 515 aa13.97□□□□□ -0.17
USP44-202ENST00000393091 FOSL2P15408 326 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms