RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 SFMBT1Q9UHJ3 866 aa19.83■□□□□ 0.76
UPF1-201ENST00000262803 SGPL1O95470 568 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 DNAJC3Q13217 504 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 GIT2Q14161 759 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 ZNF284Q2VY69 593 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 WLSQ5T9L3 541 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 B4GALNT2Q8NHY0 566 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 KANSL1LA0AUZ9 987 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.82■□□□□ 0.76
UPF1-201ENST00000262803 UNC45BQ8IWX7 931 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 GANQ9H2C0 597 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 SLC40A1Q9NP59 571 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 CLTCQ00610 1675 aaKnown RBP19.82■□□□□ 0.76
UPF1-201ENST00000262803 UBXN8O00124 270 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 GLRA3O75311 464 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 MLNP12872 115 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 ITGALP20701 1170 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 S100A5P33763 92 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 KHDRBS1Q07666 443 aaKnown RBP eCLIP19.82■□□□□ 0.76
UPF1-201ENST00000262803 MCL1Q07820 350 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 PKN1Q16512 942 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 CBWD2Q8IUF1 395 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 LRRC34Q8IZ02 419 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 KRT78Q8N1N4 520 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 MANSC1Q9H8J5 431 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 ITGB3P05106 788 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 Q4G0T1 1027 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 TMA16Q96EY4 203 aaKnown RBP19.82■□□□□ 0.76
UPF1-201ENST00000262803 DCDC2Q9UHG0 476 aa19.82■□□□□ 0.76
UPF1-201ENST00000262803 ZBTB22O15209 634 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 FKBP9O95302 570 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 CRTAMO95727 393 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 KLC1Q07866 573 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 C16orf72Q14CZ0 275 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 CYTH1Q15438 398 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 FKBP9P1Q75LS8 142 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 FBXO32Q969P5 355 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 ACSF2Q96CM8 615 aaPredicted RBP19.81■□□□□ 0.76
UPF1-201ENST00000262803 ASS1P00966 412 aaKnown RBP19.81■□□□□ 0.76
UPF1-201ENST00000262803 EPHB2P29323 1055 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 GRK3P35626 688 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 BACE1P56817 501 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 DAB2IPQ5VWQ8 1189 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 ANKS6Q68DC2 871 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 MYCBPAPQ8TBZ2 947 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 BRD8Q9H0E9 1235 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 C6orf203Q9P0P8 240 aaPredicted RBP19.81■□□□□ 0.76
UPF1-201ENST00000262803 AP1G2O75843 785 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 CSTF3Q12996 717 aaKnown RBP19.81■□□□□ 0.76
UPF1-201ENST00000262803 PCSK7Q16549 785 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 PCNX4Q63HM2 1172 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 INTS5Q6P9B9 1019 aaKnown RBP19.81■□□□□ 0.76
UPF1-201ENST00000262803 WDR49Q8IV35 697 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 ATG4AQ8WYN0 398 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 E2F7Q96AV8 911 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 RAD54BQ9Y620 910 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 IFNA14P01570 189 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 AXLP30530 894 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 CLEC4FQ8N1N0 589 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 SLC25A41Q8N5S1 370 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 CAMKK2Q96RR4 588 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 C17orf80Q9BSJ5 609 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 PRDM16Q9HAZ2 1276 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 GPRC5CQ9NQ84 441 aa19.81■□□□□ 0.76
UPF1-201ENST00000262803 SCAF8Q9UPN6 1271 aaKnown RBP19.81■□□□□ 0.76
UPF1-201ENST00000262803 SREBF1P36956 1147 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 LRRC74AQ0VAA2 488 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 ST3GAL1Q11201 340 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 ARMC2Q8NEN0 867 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 COPS7BQ9H9Q2 264 aaPredicted RBP19.8■□□□□ 0.76
UPF1-201ENST00000262803 ZC4H2Q9NQZ6 224 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 PGK2P07205 417 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 TGFB3P10600 412 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 MBL2P11226 248 aaPredicted RBP19.8■□□□□ 0.76
UPF1-201ENST00000262803 SERPINB8P50452 374 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 OAZ1P54368 228 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 PLEKHM3Q6ZWE6 761 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 EPS8L3Q8TE67 593 aaKnown RBP19.8■□□□□ 0.76
UPF1-201ENST00000262803 ZNF669Q96BR6 464 aaPredicted RBP19.8■□□□□ 0.76
UPF1-201ENST00000262803 BATF3Q9NR55 127 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 ABI2Q9NYB9 513 aaPredicted RBP19.8■□□□□ 0.76
UPF1-201ENST00000262803 SLCO1B7G3V0H7 640 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 ZNF135P52742 658 aaPredicted RBP19.8■□□□□ 0.76
UPF1-201ENST00000262803 DAB2P98082 770 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 EZH2Q15910 746 aaKnown RBP19.8■□□□□ 0.76
UPF1-201ENST00000262803 NT5DC4Q86YG4 428 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 RPRD1AQ96P16 312 aaPredicted RBP19.8■□□□□ 0.76
UPF1-201ENST00000262803 WDR41Q9HAD4 459 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 SYTL2Q9HCH5 934 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 TCF3P15923 654 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 TMEM62Q0P6H9 643 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 MRPL28Q13084 256 aaKnown RBP19.8■□□□□ 0.76
UPF1-201ENST00000262803 ZNF544Q6NX49 715 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 HS6ST3Q8IZP7 471 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 TEX9Q8N6V9 391 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 ZFYVE19Q96K21 471 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 CBWD1Q9BRT8 395 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 PRRG3Q9BZD7 231 aa19.8■□□□□ 0.76
UPF1-201ENST00000262803 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.8■□□□□ 0.767e-7■■■■□ 21.4
UPF1-201ENST00000262803 PCDHB12Q9Y5F1 795 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms