RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 CADM1Q9BY67 442 aaKnown RBP10.51□□□□□ -0.73
LIG3-201ENST00000262327 MANSC1Q9H8J5 431 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 ZNF214Q9UL59 606 aaPredicted RBP10.51□□□□□ -0.73
LIG3-201ENST00000262327 LOXHD1Q8IVV2 1947 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 PTPRFP10586 1907 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 LPXNO60711 386 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 PYGBP11216 843 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 KRT3P12035 628 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 TBXAS1P24557 533 aaPredicted RBP10.51□□□□□ -0.73
LIG3-201ENST00000262327 ARL4CP56559 192 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 PSMC1P62191 440 aaKnown RBP10.51□□□□□ -0.73
LIG3-201ENST00000262327 TRPC3Q13507 836 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 TMEM132AQ24JP5 1023 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 KBTBD12Q3ZCT8 623 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 TREML2Q5T2D2 321 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 DNAJC14Q6Y2X3 702 aaPredicted RBP10.51□□□□□ -0.73
LIG3-201ENST00000262327 TRIM50Q86XT4 487 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 TDRPQ86YL5 185 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 KCTD6Q8NC69 237 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 SLC35B2Q8TB61 432 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 PORCNQ9H237 461 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 GBA2Q9HCG7 927 aaPredicted RBP10.51□□□□□ -0.73
LIG3-201ENST00000262327 MARCOQ9UEW3 520 aaPredicted RBP10.51□□□□□ -0.73
LIG3-201ENST00000262327 FARP1Q9Y4F1 1045 aaPredicted RBP10.51□□□□□ -0.73
LIG3-201ENST00000262327 C3orf70A6NLC5 250 aaPredicted RBP10.5□□□□□ -0.73
LIG3-201ENST00000262327 E5RJQ4 531 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 MAP3K13O43283 966 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 SMNDC1O75940 238 aaKnown RBP eCLIP10.5□□□□□ -0.73
LIG3-201ENST00000262327 KRT36O76013 467 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 ASS1P00966 412 aaKnown RBP10.5□□□□□ -0.73
LIG3-201ENST00000262327 MT-ND3P03897 115 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 CALB1P05937 261 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 ITGAVP06756 1048 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 TROVE2P10155 538 aaKnown RBP eCLIP10.5□□□□□ -0.73
LIG3-201ENST00000262327 MCCD1P59942 119 aaPredicted RBP10.5□□□□□ -0.73
LIG3-201ENST00000262327 EIF3EP60228 445 aaKnown RBP10.5□□□□□ -0.73
LIG3-201ENST00000262327 SNAPC2Q13487 334 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 C1orf228Q6PIY5 440 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 PRPF39Q86UA1 669 aaKnown RBP10.5□□□□□ -0.73
LIG3-201ENST00000262327 PPIL6Q8IXY8 311 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 C2orf69Q8N8R5 385 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 ATP11CQ8NB49 1132 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 PRPF31Q8WWY3 499 aaKnown RBP10.5□□□□□ -0.73
LIG3-201ENST00000262327 TSSK1BQ9BXA7 367 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 ASCC2Q9H1I8 757 aaPredicted RBP10.5□□□□□ -0.73
LIG3-201ENST00000262327 CHCHD3Q9NX63 227 aaKnown RBP10.5□□□□□ -0.73
LIG3-201ENST00000262327 HMGXB4Q9UGU5 601 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 SHOC2Q9UQ13 582 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 DRG1Q9Y295 367 aaKnown RBP10.5□□□□□ -0.73
LIG3-201ENST00000262327 KIAA1217Q5T5P2 1943 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 FAM237BA0A1B0GVD1 139 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 TCRBV5S1A1TA0A578 114 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 KBTBD13C9JR72 458 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 OATP04181 439 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 RBP3P10745 1247 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 OSBPP22059 807 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 IRX4P78413 519 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 USP4Q13107 963 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 PTK7Q13308 1070 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 KPNB1Q14974 876 aaKnown RBP10.5□□□□□ -0.73
LIG3-201ENST00000262327 CCDC6Q16204 474 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 PARP6Q2NL67 630 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 ALYREFQ86V81 257 aaKnown RBP10.5□□□□□ -0.73
LIG3-201ENST00000262327 TMEM192Q8IY95 271 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 ZNF276Q8N554 614 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 NAT8LQ8N9F0 302 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 CHST13Q8NET6 341 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 DCAKDQ8WVC6 231 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 NKD2Q969F2 451 aaPredicted RBP10.5□□□□□ -0.73
LIG3-201ENST00000262327 CPXM1Q96SM3 734 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 TMEM120AQ9BXJ8 343 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 SLC13A1Q9BZW2 595 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 CYLDQ9NQC7 956 aa10.5□□□□□ -0.73
LIG3-201ENST00000262327 UGT1A9O60656 530 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 TOP3BO95985 862 aaKnown RBP10.49□□□□□ -0.73
LIG3-201ENST00000262327 KDELR1P24390 212 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 PTPN4P29074 926 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 ZNF132P52740 706 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 ARFIP2P53365 341 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 MCL1Q07820 350 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 BMPR2Q13873 1038 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 RCN1Q15293 331 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 CTC1Q2NKJ3 1217 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 ZNF699Q32M78 642 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 ANO7Q6IWH7 933 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 XRRA1Q6P2D8 792 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 RINLQ6ZS11 566 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 CDHR3Q6ZTQ4 885 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 SPATA18Q8TC71 538 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 FOXP3Q9BZS1 431 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 UGT1A7Q9HAW7 530 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 UGT1A10Q9HAW8 530 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 UGT1A8Q9HAW9 530 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 GPATCH2LQ9NWQ4 482 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 SLC24A2Q9UI40 661 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 A0A0G2JMZ2 1700 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 DPPA5A6NC42 116 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 C2CD2LO14523 706 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 CYB561D2O14569 222 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 HAUS5O94927 633 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms