RNA–Protein interactions for RNA: YPR001W

CIT3, Transcript of Dual specificity mitochondrial citrate and methylcitrate synthase, yeast

Gene CIT3, Length 1,461 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CIT3	YPR001W	VTH1	P40438	1549 aa		4.27	□□□□□ -1.73
CIT3	YPR001W	MYO1	P08964	1928 aa		4.27	□□□□□ -1.73
CIT3	YPR001W	YKR045C	P36138	183 aa		4.27	□□□□□ -1.73
CIT3	YPR001W	FIT3	Q08907	204 aa		4.27	□□□□□ -1.73
CIT3	YPR001W	PAU12	P53343	120 aa		4.26	□□□□□ -1.73
CIT3	YPR001W	OST5	Q92316	86 aa		4.26	□□□□□ -1.73
CIT3	YPR001W	VTH2	P40890	1549 aa		4.26	□□□□□ -1.73
CIT3	YPR001W	GSC2	P40989	1895 aa		4.26	□□□□□ -1.73
CIT3	YPR001W	RTC6	O14464	93 aa		4.25	□□□□□ -1.73
CIT3	YPR001W	YPR096C	O13587	100 aa		4.24	□□□□□ -1.73
CIT3	YPR001W	RPL22A	P05749	121 aa	Known RBP	4.24	□□□□□ -1.73
CIT3	YPR001W	SMX2	P40204	77 aa	Known RBP	4.24	□□□□□ -1.73
CIT3	YPR001W	MIX14	Q04341	121 aa		4.24	□□□□□ -1.73
CIT3	YPR001W	YDR029W	Q12111	104 aa		4.24	□□□□□ -1.73
CIT3	YPR001W	URB1	P34241	1764 aa	Known RBP	4.23	□□□□□ -1.73
CIT3	YPR001W	MHF1	Q3E835	90 aa		4.23	□□□□□ -1.73
CIT3	YPR001W	VMR1	P38735	1592 aa		4.22	□□□□□ -1.73
CIT3	YPR001W	RPL36B	O14455	100 aa	Known RBP	4.22	□□□□□ -1.73
CIT3	YPR001W	RPL36A	P05745	100 aa	Predicted RBP	4.22	□□□□□ -1.73
CIT3	YPR001W	MSL1	P40567	111 aa	Predicted RBP	4.22	□□□□□ -1.73
CIT3	YPR001W	NUP188	P52593	1655 aa	Known RBP	4.21	□□□□□ -1.74
CIT3	YPR001W	PAU2	P32612	120 aa		4.21	□□□□□ -1.74
CIT3	YPR001W	EMC5	P40540	141 aa		4.21	□□□□□ -1.74
CIT3	YPR001W	FPR1	P20081	114 aa	Known RBP	4.2	□□□□□ -1.74
CIT3	YPR001W	MIX17	Q03667	156 aa		4.2	□□□□□ -1.74
CIT3	YPR001W	YLR296W	Q05898	108 aa		4.2	□□□□□ -1.74
CIT3	YPR001W	PCC1	Q3E833	88 aa		4.2	□□□□□ -1.74
CIT3	YPR001W	YHR213W-A	Q8TGT4	77 aa		4.2	□□□□□ -1.74
CIT3	YPR001W	BCK1	Q01389	1478 aa		4.2	□□□□□ -1.74
CIT3	YPR001W	YJL197C-A	P0C5P0	93 aa		4.19	□□□□□ -1.74
CIT3	YPR001W	SNN1	P48232	102 aa		4.19	□□□□□ -1.74
CIT3	YPR001W	YIL014C-A	Q02598	104 aa		4.19	□□□□□ -1.74
CIT3	YPR001W	FLO9	P39712	1322 aa		4.19	□□□□□ -1.74
CIT3	YPR001W	NUP192	P47054	1683 aa		4.18	□□□□□ -1.74
CIT3	YPR001W	ATG8	P38182	117 aa	RIP-Chip data	4.18	□□□□□ -1.74	not detected
CIT3	YPR001W	RPL13B	P40212	199 aa	Known RBP	4.18	□□□□□ -1.74
CIT3	YPR001W	RPL22B	P56628	122 aa	Known RBP	4.18	□□□□□ -1.74
CIT3	YPR001W	SPO14	P36126	1683 aa		4.18	□□□□□ -1.74
CIT3	YPR001W	PAU24	P38155	120 aa		4.18	□□□□□ -1.74
CIT3	YPR001W	PAU19	P0CE85	124 aa		4.17	□□□□□ -1.74
CIT3	YPR001W	HMRA1	P0CY11	126 aa		4.17	□□□□□ -1.74
CIT3	YPR001W	PAU3	P25610	124 aa		4.17	□□□□□ -1.74
CIT3	YPR001W	YLR194C	Q05777	254 aa		4.17	□□□□□ -1.74
CIT3	YPR001W	HPA2	Q06592	156 aa		4.17	□□□□□ -1.74
CIT3	YPR001W	PRM7	Q12459	698 aa		4.17	□□□□□ -1.74
CIT3	YPR001W	YRF1-2	P40105	1681 aa		4.16	□□□□□ -1.74
CIT3	YPR001W	QCR8	P08525	94 aa		4.16	□□□□□ -1.74
CIT3	YPR001W	YBR032W	P38223	100 aa		4.16	□□□□□ -1.74
CIT3	YPR001W	RSM19	P53733	91 aa	Predicted RBP	4.16	□□□□□ -1.74
CIT3	YPR001W	YMR082C	Q04276	118 aa		4.16	□□□□□ -1.74
CIT3	YPR001W	YIR020C	P40575	100 aa		4.15	□□□□□ -1.75
CIT3	YPR001W	TAR1	Q8TGM6	124 aa		4.15	□□□□□ -1.75
CIT3	YPR001W	FAS2	P19097	1887 aa	Known RBP	4.14	□□□□□ -1.75
CIT3	YPR001W	LAA1	P39526	2014 aa		4.14	□□□□□ -1.75
CIT3	YPR001W	ECM12	O13529	151 aa		4.14	□□□□□ -1.75
CIT3	YPR001W	YHR213W	P0CI67	198 aa		4.14	□□□□□ -1.75
CIT3	YPR001W	SRX1	P36077	127 aa		4.14	□□□□□ -1.75
CIT3	YPR001W	DAN1	P47178	298 aa		4.14	□□□□□ -1.75
CIT3	YPR001W	FAB1	P34756	2278 aa		4.13	□□□□□ -1.75
CIT3	YPR001W	COX23	P38824	151 aa		4.12	□□□□□ -1.75
CIT3	YPR001W	SEN15	Q04675	128 aa		4.12	□□□□□ -1.75
CIT3	YPR001W	HRT1	Q08273	121 aa		4.12	□□□□□ -1.75
CIT3	YPR001W	YDL012C	Q12489	107 aa		4.12	□□□□□ -1.75
CIT3	YPR001W	YHR138C	P38841	114 aa	Predicted RBP	4.11	□□□□□ -1.75
CIT3	YPR001W	SEC7	P11075	2009 aa	Known RBP	4.11	□□□□□ -1.75
CIT3	YPR001W	BUD3	P25558	1636 aa		4.1	□□□□□ -1.75
CIT3	YPR001W	CYR1	P08678	2026 aa	Known RBP	4.1	□□□□□ -1.75
CIT3	YPR001W	YGL014C-A	P0C5N1	53 aa		4.1	□□□□□ -1.75
CIT3	YPR001W	PAU16	P35994	123 aa		4.1	□□□□□ -1.75
CIT3	YPR001W	PDX3	P38075	228 aa	Known RBP	4.1	□□□□□ -1.75
CIT3	YPR001W	PAU15	P40585	124 aa		4.1	□□□□□ -1.75
CIT3	YPR001W	RRT15	Q3E811	62 aa		4.1	□□□□□ -1.75
CIT3	YPR001W	YBR027C	P38220	110 aa		4.09	□□□□□ -1.75
CIT3	YPR001W	YEL008W	P40001	126 aa		4.09	□□□□□ -1.75
CIT3	YPR001W	PFY1	P07274	126 aa		4.08	□□□□□ -1.76
CIT3	YPR001W	RGM1	Q00453	211 aa		4.08	□□□□□ -1.76
CIT3	YPR001W	SED1	Q01589	338 aa		4.08	□□□□□ -1.76
CIT3	YPR001W	SUS1	Q6WNK7	96 aa		4.08	□□□□□ -1.76
CIT3	YPR001W	SRB6	P32570	121 aa		4.07	□□□□□ -1.76
CIT3	YPR001W	LST8	P41318	303 aa		4.07	□□□□□ -1.76
CIT3	YPR001W	APC1	P53886	1748 aa		4.06	□□□□□ -1.76
CIT3	YPR001W	YBR219C	P38317	127 aa		4.06	□□□□□ -1.76
CIT3	YPR001W	YLR162W	Q06235	118 aa		4.06	□□□□□ -1.76
CIT3	YPR001W	VAM10	Q08474	114 aa		4.06	□□□□□ -1.76
CIT3	YPR001W	RPL33A	P05744	107 aa	Known RBP	4.05	□□□□□ -1.76
CIT3	YPR001W	POR2	P40478	281 aa		4.05	□□□□□ -1.76
CIT3	YPR001W	YFR010W-A	P0C5N0	62 aa		4.05	□□□□□ -1.76
CIT3	YPR001W	YDR042C	Q03205	200 aa		4.05	□□□□□ -1.76
CIT3	YPR001W	NRG2	P38082	220 aa		4.04	□□□□□ -1.76
CIT3	YPR001W	YHL005C	P38752	130 aa		4.04	□□□□□ -1.76
CIT3	YPR001W	YMR122C	Q03879	124 aa		4.04	□□□□□ -1.76
CIT3	YPR001W	YLR363W-A	Q3E747	85 aa		4.04	□□□□□ -1.76
CIT3	YPR001W	UBR2	Q07963	1872 aa		4.03	□□□□□ -1.76
CIT3	YPR001W	YRF1-1	P0CX20	1796 aa		4.03	□□□□□ -1.76
CIT3	YPR001W	YRF1-5	P0CX21	1796 aa		4.03	□□□□□ -1.76
CIT3	YPR001W	YRF1-8	P0CX22	1796 aa		4.03	□□□□□ -1.76
CIT3	YPR001W	CYB5	P40312	120 aa		4.03	□□□□□ -1.76
CIT3	YPR001W	YHR086W-A	Q3E746	53 aa		4.02	□□□□□ -1.77
CIT3	YPR001W	HMRA2	P0CY13	119 aa		4.01	□□□□□ -1.77
CIT3	YPR001W	COA3	Q3E7B2	85 aa		4.01	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 7.3 ms