RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeastyeast

Gene PRE9, Length 777 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE9YGR135W SIP18P50263 79 aa3.29□□□□□ -1.88
PRE9YGR135W SPG4Q04438 115 aa3.29□□□□□ -1.88
PRE9YGR135W LSM6Q06406 86 aaKnown RBP3.29□□□□□ -1.88
PRE9YGR135W YPL261CQ08976 102 aa3.29□□□□□ -1.88
PRE9YGR135W HMRA2P0CY13 119 aa3.28□□□□□ -1.88
PRE9YGR135W PHO85P17157 305 aa3.28□□□□□ -1.88
PRE9YGR135W YHR140WP38842 239 aa3.28□□□□□ -1.88
PRE9YGR135W VTC1P40046 129 aaRIP-Chip data3.28□□□□□ -1.88not detected
PRE9YGR135W YNL217WP40152 326 aa3.28□□□□□ -1.88
PRE9YGR135W TOS6P48560 102 aa3.28□□□□□ -1.88
PRE9YGR135W UBC7Q02159 165 aa3.28□□□□□ -1.88
PRE9YGR135W TIM22Q12328 207 aa3.28□□□□□ -1.88
PRE9YGR135W YIR021W-AQ3E739 70 aa3.28□□□□□ -1.88
PRE9YGR135W YMR105W-AQ8TGS8 64 aa3.28□□□□□ -1.88
PRE9YGR135W TOM1Q03280 3268 aa3.27□□□□□ -1.89
PRE9YGR135W RRT1P38192 103 aa3.27□□□□□ -1.89
PRE9YGR135W SPI1P40092 148 aa3.27□□□□□ -1.89
PRE9YGR135W YJL027CP47063 138 aaPredicted RBP3.27□□□□□ -1.89
PRE9YGR135W YAL063C-AQ3E791 96 aa3.27□□□□□ -1.89
PRE9YGR135W CYR1P08678 2026 aaKnown RBP3.27□□□□□ -1.89
PRE9YGR135W RPL39P04650 51 aa3.26□□□□□ -1.89
PRE9YGR135W MIG3P39943 394 aa3.26□□□□□ -1.89
PRE9YGR135W IGD1P43598 195 aa3.26□□□□□ -1.89
PRE9YGR135W MMS2P53152 137 aa3.26□□□□□ -1.89
PRE9YGR135W YTH1Q06102 208 aaPredicted RBP3.26□□□□□ -1.89
PRE9YGR135W IGO2Q9P305 131 aa3.26□□□□□ -1.89
PRE9YGR135W AIM11P87275 137 aa3.25□□□□□ -1.89
PRE9YGR135W FCY1Q12178 158 aa3.25□□□□□ -1.89
PRE9YGR135W YFL041W-AQ3E817 63 aa3.25□□□□□ -1.89
PRE9YGR135W Q0255P03881 472 aa3.24□□□□□ -1.89
PRE9YGR135W RPS23AP0CX29 145 aaKnown RBP3.24□□□□□ -1.89
PRE9YGR135W RPS23BP0CX30 145 aa3.24□□□□□ -1.89
PRE9YGR135W UGX2P32772 223 aa3.24□□□□□ -1.89
PRE9YGR135W UTH1P36135 365 aa3.24□□□□□ -1.89
PRE9YGR135W FIP1P45976 327 aa3.24□□□□□ -1.89
PRE9YGR135W AIM34Q03673 198 aa3.24□□□□□ -1.89
PRE9YGR135W YMR244WQ04018 355 aa3.24□□□□□ -1.89
PRE9YGR135W YMR317WQ04893 1140 aa3.24□□□□□ -1.89
PRE9YGR135W YLR194CQ05777 254 aa3.24□□□□□ -1.89
PRE9YGR135W YBL112CQ3E7Y4 105 aa3.24□□□□□ -1.89
PRE9YGR135W YFL051CP43552 160 aa3.23□□□□□ -1.89
PRE9YGR135W YOL160WQ08321 113 aa3.23□□□□□ -1.89
PRE9YGR135W IRC23Q08416 157 aa3.23□□□□□ -1.89
PRE9YGR135W YDR119W-AQ2V2P9 66 aa3.23□□□□□ -1.89
PRE9YGR135W YLR361C-AQ3E795 98 aa3.23□□□□□ -1.89
PRE9YGR135W YBL008W-AQ3E821 79 aa3.23□□□□□ -1.89
PRE9YGR135W YDR034W-BQ6Q5X2 51 aa3.23□□□□□ -1.89
PRE9YGR135W FAB1P34756 2278 aa3.22□□□□□ -1.89
PRE9YGR135W YCR085WP25650 117 aa3.22□□□□□ -1.89
PRE9YGR135W NRG2P38082 220 aa3.22□□□□□ -1.89
PRE9YGR135W DSE2P38844 325 aa3.22□□□□□ -1.89
PRE9YGR135W KRE9P39005 276 aa3.22□□□□□ -1.89
PRE9YGR135W SKI6P46948 246 aaPredicted RBP3.22□□□□□ -1.89
PRE9YGR135W VPS55P47111 140 aa3.22□□□□□ -1.89
PRE9YGR135W COX12Q01519 83 aa3.22□□□□□ -1.89
PRE9YGR135W PRM7Q12459 698 aa3.22□□□□□ -1.89
PRE9YGR135W YOR008C-AQ3E7B9 74 aa3.22□□□□□ -1.89
PRE9YGR135W CCW14O13547 238 aa3.21□□□□□ -1.9
PRE9YGR135W MRPL38P35996 138 aaPredicted RBP3.21□□□□□ -1.9
PRE9YGR135W CTR2P38865 189 aa3.21□□□□□ -1.9
PRE9YGR135W EDC2P40023 145 aaPredicted RBP3.21□□□□□ -1.9
PRE9YGR135W MRPL49P40858 161 aaPredicted RBP3.21□□□□□ -1.9
PRE9YGR135W CWP2P43497 92 aa3.21□□□□□ -1.9
PRE9YGR135W YGL260WP53056 76 aa3.21□□□□□ -1.9
PRE9YGR135W MRPS12P53732 153 aa3.21□□□□□ -1.9
PRE9YGR135W ABF2Q02486 183 aa3.21□□□□□ -1.9
PRE9YGR135W ENV10Q99382 181 aa3.21□□□□□ -1.9
PRE9YGR135W ATP15P21306 62 aa3.2□□□□□ -1.9
PRE9YGR135W MID2P36027 376 aa3.2□□□□□ -1.9
PRE9YGR135W YER121WP40076 114 aa3.2□□□□□ -1.9
PRE9YGR135W TOS8P53147 276 aa3.2□□□□□ -1.9
PRE9YGR135W YGR039WP53225 103 aa3.2□□□□□ -1.9
PRE9YGR135W YNL190WP53872 204 aa3.2□□□□□ -1.9
PRE9YGR135W YNL046WP53956 172 aa3.2□□□□□ -1.9
PRE9YGR135W POL2P21951 2222 aaKnown RBP3.2□□□□□ -1.9
PRE9YGR135W YHR139C-AO13536 103 aa3.19□□□□□ -1.9
PRE9YGR135W LDB16P25587 256 aa3.19□□□□□ -1.9
PRE9YGR135W YJR146WP47174 117 aa3.19□□□□□ -1.9
PRE9YGR135W YGR025WP53216 100 aa3.19□□□□□ -1.9
PRE9YGR135W SED1Q01589 338 aa3.19□□□□□ -1.9
PRE9YGR135W YDR381C-AQ3E6R5 114 aa3.19□□□□□ -1.9
PRE9YGR135W FAS1P07149 2051 aaKnown RBP3.19□□□□□ -1.9
PRE9YGR135W CDC39P25655 2108 aaKnown RBP3.19□□□□□ -1.9
PRE9YGR135W ACC1Q00955 2233 aaKnown RBP3.18□□□□□ -1.9
PRE9YGR135W RAD6P06104 172 aa3.18□□□□□ -1.9
PRE9YGR135W VMA11P32842 164 aa3.18□□□□□ -1.9
PRE9YGR135W MRPL24P36525 258 aaPredicted RBP3.18□□□□□ -1.9
PRE9YGR135W SMP1P38128 452 aa3.18□□□□□ -1.9
PRE9YGR135W YHL037CP38733 133 aa3.18□□□□□ -1.9
PRE9YGR135W RRT13P40042 185 aa3.18□□□□□ -1.9
PRE9YGR135W PEX17P40155 199 aa3.18□□□□□ -1.9
PRE9YGR135W POR2P40478 281 aa3.18□□□□□ -1.9
PRE9YGR135W DCV1P43595 202 aa3.18□□□□□ -1.9
PRE9YGR135W YGR219WP53307 113 aa3.18□□□□□ -1.9
PRE9YGR135W YBR200W-AQ3E755 54 aa3.18□□□□□ -1.9
PRE9YGR135W VPS13Q07878 3144 aa3.18□□□□□ -1.9
PRE9YGR135W BLM10P43583 2143 aa3.17□□□□□ -1.9
PRE9YGR135W SEC16P48415 2195 aaKnown RBP3.17□□□□□ -1.9
PRE9YGR135W AIM19P40502 157 aa3.17□□□□□ -1.9
PRE9YGR135W YGL034CP53186 121 aa3.17□□□□□ -1.9
Retrieved 100 of 5,963 RNA–protein pairs in 20.4 ms