RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 PTPN1P18031 435 aaKnown RBP14.84□□□□□ -0.03
LINC00339-211ENST00000641009 HDCP19113 662 aa14.84□□□□□ -0.03
LINC00339-211ENST00000641009 ANXA13P27216 316 aa14.84□□□□□ -0.03
LINC00339-211ENST00000641009 CDH8P55286 799 aa14.84□□□□□ -0.03
LINC00339-211ENST00000641009 USP4Q13107 963 aa14.84□□□□□ -0.03
LINC00339-211ENST00000641009 SRSF5Q13243 272 aaKnown RBP14.84□□□□□ -0.03
LINC00339-211ENST00000641009 BIRC3Q13489 604 aa14.84□□□□□ -0.03
LINC00339-211ENST00000641009 KCNB1Q14721 858 aa14.84□□□□□ -0.03
LINC00339-211ENST00000641009 PDGFRLQ15198 375 aa14.84□□□□□ -0.03
LINC00339-211ENST00000641009 TMEM196Q5HYL7 178 aa14.84□□□□□ -0.03
LINC00339-211ENST00000641009 SYNPOQ8N3V7 929 aa14.84□□□□□ -0.03
LINC00339-211ENST00000641009 PARD3BQ8TEW8 1205 aa14.84□□□□□ -0.03
LINC00339-211ENST00000641009 SECISBP2LQ93073 1101 aaKnown RBP14.84□□□□□ -0.03
LINC00339-211ENST00000641009 SYAP1Q96A49 352 aaPredicted RBP14.84□□□□□ -0.03
LINC00339-211ENST00000641009 KCTD10Q9H3F6 313 aa14.84□□□□□ -0.03
LINC00339-211ENST00000641009 SMYD3Q9H7B4 428 aa14.84□□□□□ -0.03
LINC00339-211ENST00000641009 FBRSL1Q9HCM7 1045 aaKnown RBP14.84□□□□□ -0.03
LINC00339-211ENST00000641009 DMAC2Q9NW81 257 aa14.84□□□□□ -0.03
LINC00339-211ENST00000641009 DUS2Q9NX74 493 aaKnown RBP14.84□□□□□ -0.03
LINC00339-211ENST00000641009 HPSEQ9Y251 543 aa14.84□□□□□ -0.03
LINC00339-211ENST00000641009 WNT6Q9Y6F9 365 aa14.84□□□□□ -0.03
LINC00339-211ENST00000641009 CLDN5O00501 218 aa14.83□□□□□ -0.03
LINC00339-211ENST00000641009 TRDMT1O14717 391 aaKnown RBP14.83□□□□□ -0.03
LINC00339-211ENST00000641009 CLSTN1O94985 981 aa14.83□□□□□ -0.03
LINC00339-211ENST00000641009 ATICP31939 592 aa14.83□□□□□ -0.03
LINC00339-211ENST00000641009 RAP1GAPP47736 663 aa14.83□□□□□ -0.03
LINC00339-211ENST00000641009 DLG4P78352 724 aa14.83□□□□□ -0.03
LINC00339-211ENST00000641009 KRT85P78386 507 aa14.83□□□□□ -0.03
LINC00339-211ENST00000641009 GRSF1Q12849 480 aaKnown RBP eCLIP14.83□□□□□ -0.03
LINC00339-211ENST00000641009 PSMD2Q13200 908 aa14.83□□□□□ -0.03
LINC00339-211ENST00000641009 SCARA5Q6ZMJ2 495 aa14.83□□□□□ -0.03
LINC00339-211ENST00000641009 PRR23BQ6ZRT6 265 aa14.83□□□□□ -0.03
LINC00339-211ENST00000641009 B3GALNT2Q8NCR0 500 aa14.83□□□□□ -0.03
LINC00339-211ENST00000641009 SH3RF2Q8TEC5 729 aa14.83□□□□□ -0.03
LINC00339-211ENST00000641009 OSCP1Q8WVF1 389 aa14.83□□□□□ -0.03
LINC00339-211ENST00000641009 TTLL2Q9BWV7 592 aa14.83□□□□□ -0.03
LINC00339-211ENST00000641009 B3GNT5Q9BYG0 378 aa14.83□□□□□ -0.03
LINC00339-211ENST00000641009 ZNF518BQ9C0D4 1074 aa14.83□□□□□ -0.03
LINC00339-211ENST00000641009 ECT2Q9H8V3 914 aa14.83□□□□□ -0.03
LINC00339-211ENST00000641009 TRPM5Q9NZQ8 1165 aa14.83□□□□□ -0.03
LINC00339-211ENST00000641009 RAB23Q9ULC3 237 aa14.83□□□□□ -0.03
LINC00339-211ENST00000641009 SPTBN2O15020 2390 aa14.83□□□□□ -0.04
LINC00339-211ENST00000641009 HRO43593 1189 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 VNN1O95497 513 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 EGFP01133 1207 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 C4BPAP04003 597 aaKnown RBP14.82□□□□□ -0.04
LINC00339-211ENST00000641009 FAM163BP0C2L3 166 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 PRR29P0C7W0 189 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 GJA4P35212 333 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 SYKP43405 635 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 IFNAR2P48551 515 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 NDUFA8P51970 172 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 NOP14P78316 857 aaKnown RBP14.82□□□□□ -0.04
LINC00339-211ENST00000641009 CLDN10P78369 228 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 ZXDBP98169 803 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 NCOA4Q13772 614 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 ZNF699Q32M78 642 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 EML3Q32P44 896 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 ERMP1Q7Z2K6 904 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 LONP2Q86WA8 852 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 SLC9A9Q8IVB4 645 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 CPA6Q8N4T0 437 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 C8orf48Q96LL4 319 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 CEP295NLQ96MC4 621 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 ELOVL4Q9GZR5 314 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 VRTNQ9H8Y1 702 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 USP25Q9UHP3 1055 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 GMEB2Q9UKD1 530 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 ARHGAP26Q9UNA1 814 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 MYO18AQ92614 2054 aaKnown RBP14.82□□□□□ -0.04
LINC00339-211ENST00000641009 ABL1P00519 1130 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 NR3C1P04150 777 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 RPN1P04843 607 aaKnown RBP14.82□□□□□ -0.04
LINC00339-211ENST00000641009 GALK1P51570 392 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 FOXK2Q01167 660 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 AMPD2Q01433 879 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 IFRD2Q12894 506 aaPredicted RBP14.82□□□□□ -0.04
LINC00339-211ENST00000641009 SIM2Q14190 667 aaPredicted RBP14.82□□□□□ -0.04
LINC00339-211ENST00000641009 ZNF667Q5HYK9 610 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 ATP2A3Q93084 1043 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 RNF38Q9H0F5 515 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 SDCBP2Q9H190 292 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 LINC00597Q9H2U6 94 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 PARD6AQ9NPB6 346 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 POLR3BQ9NW08 1133 aaPredicted RBP14.82□□□□□ -0.04
LINC00339-211ENST00000641009 USP18Q9UMW8 372 aa14.82□□□□□ -0.04
LINC00339-211ENST00000641009 ZNF840PA6NDX5 716 aa14.81□□□□□ -0.04
LINC00339-211ENST00000641009 PDXKO00764 312 aa14.81□□□□□ -0.04
LINC00339-211ENST00000641009 RNF40O75150 1001 aa14.81□□□□□ -0.04
LINC00339-211ENST00000641009 MYL1P05976 194 aa14.81□□□□□ -0.04
LINC00339-211ENST00000641009 TGM1P22735 817 aa14.81□□□□□ -0.04
LINC00339-211ENST00000641009 PXNP49023 591 aaPredicted RBP14.81□□□□□ -0.04
LINC00339-211ENST00000641009 PDE6CP51160 858 aa14.81□□□□□ -0.04
LINC00339-211ENST00000641009 AP3M2P53677 418 aa14.81□□□□□ -0.04
LINC00339-211ENST00000641009 TAF10Q12962 218 aa14.81□□□□□ -0.04
LINC00339-211ENST00000641009 RSPO4Q2I0M5 234 aaPredicted RBP14.81□□□□□ -0.04
LINC00339-211ENST00000641009 CEP135Q66GS9 1140 aa14.81□□□□□ -0.04
LINC00339-211ENST00000641009 LAIR1Q6GTX8 287 aa14.81□□□□□ -0.04
LINC00339-211ENST00000641009 TMEM174Q8WUU8 243 aa14.81□□□□□ -0.04
LINC00339-211ENST00000641009 KCNK16Q96T55 309 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms