RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	ACVR2B	Q13705	512 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	UBAP2L	Q14157	1087 aa	Known RBP	11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	DENND5B	Q6ZUT9	1274 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	POLN	Q7Z5Q5	900 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	CNKSR2	Q8WXI2	1034 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	CLMN	Q96JQ2	1002 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	EPB41L4B	Q9H329	900 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	LYN	P07948	512 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	HIRA	P54198	1017 aa	Predicted RBP	11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	AP1B1	Q10567	949 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	FLOT2	Q14254	428 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	LPCAT4	Q643R3	524 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	LCA5	Q86VQ0	697 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	RBM15B	Q8NDT2	890 aa	Known RBP	11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	FAM192A	Q9GZU8	254 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	NRBP2	Q9NSY0	501 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	GPATCH2L	Q9NWQ4	482 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	LZTS1	Q9Y250	596 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	PCDHAC2	Q9Y5I4	1007 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	NUP188	Q5SRE5	1749 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	ROBO3	Q96MS0	1386 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	RNF103-CHMP3	A0A140T963	221 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	GIPC1	O14908	333 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	FKBP6	O75344	327 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	PSMD10	O75832	226 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	NPTXR	O95502	500 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	CHRM1	P11229	460 aa	Predicted RBP	11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	RAG1	P15918	1043 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	MAMLD1	Q13495	774 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	DUOXA2	Q1HG44	320 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	APOPT1	Q96IL0	206 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	ZNF333	Q96JL9	665 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	TRAPPC9	Q96Q05	1148 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	ECSIT	Q9BQ95	431 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	EFHD1	Q9BUP0	239 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	VAV3	Q9UKW4	847 aa		11.87	□□□□□ -0.51
CLN3-238	ENST00000569430	AVIL	O75366	819 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	CRCP	O75575	148 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	ARL4A	P40617	200 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	IFRD2	Q12894	506 aa	Predicted RBP	11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	MYBPC2	Q14324	1141 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	HEATR6	Q6AI08	1181 aa	Known RBP	11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	SESTD1	Q86VW0	696 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	ZDHHC14	Q8IZN3	488 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	GLIS1	Q8NBF1	620 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	FAM81A	Q8TBF8	368 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	WDR60	Q8WVS4	1066 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	TAAR1	Q96RJ0	339 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	PRPF18	Q99633	342 aa	Known RBP	11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	GRIP2	Q9C0E4	1043 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	DNAI2	Q9GZS0	605 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	GRID1	Q9ULK0	1009 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	PRR5-ARHGAP8	B1AHC4	643 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	NFIB	O00712	420 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	HNRNPR	O43390	633 aa	Known RBP	11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	C6orf222	P0C671	652 aa	Predicted RBP	11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	CCNB1	P14635	433 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	SFN	P31947	248 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	ARHGAP8	P85298	464 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	LBR	Q14739	615 aa	Known RBP	11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	GALNTL6	Q49A17	601 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	MARK2	Q7KZI7	788 aa	Known RBP	11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	PODN	Q7Z5L7	613 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	KATNAL2	Q8IYT4	538 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	ULK2	Q8IYT8	1036 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	AFAP1L2	Q8N4X5	818 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	UBA3	Q8TBC4	463 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	SLC38A10	Q9HBR0	1119 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	AVEN	Q9NQS1	362 aa	Predicted RBP	11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	STX18	Q9P2W9	335 aa	Known RBP	11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	LRRC42	Q9Y546	428 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	DCX	O43602	365 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	PEX1	O43933	1283 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	CSDE1	O75534	798 aa	Known RBP	11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	CCND2	P30279	289 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	CASP2	P42575	452 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	TKFC	Q3LXA3	575 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	C16orf87	Q6PH81	154 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	LAYN	Q6UX15	382 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	ACAD11	Q709F0	780 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	THAP11	Q96EK4	314 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	ZBTB45	Q96K62	511 aa	Predicted RBP	11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	XAB2	Q9HCS7	855 aa	Known RBP	11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	DMAP1	Q9NPF5	467 aa	Predicted RBP	11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	PICK1	Q9NRD5	415 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	C20orf96	Q9NUD7	363 aa	Predicted RBP	11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	GTSE1	Q9NYZ3	720 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	ALOX15B	O15296	676 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	ATP9B	O43861	1147 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	TBC1D12	O60347	775 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	DGAT1	O75907	488 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	RTN3	O95197	1032 aa	Predicted RBP	11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	PYGL	P06737	847 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	ABHD2	P08910	425 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	SDC4	P31431	198 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	RPL22	P35268	128 aa	Known RBP	11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	MSX2	P35548	267 aa	Predicted RBP	11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	NEK3	P51956	506 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	MGAT5	Q09328	741 aa		11.86	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms