RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 CNGA2Q16280 664 aa18.73■□□□□ 0.59
SNX1-208ENST00000559844 CLLU1OSQ5K130 101 aa18.73■□□□□ 0.59
SNX1-208ENST00000559844 SYDE1Q6ZW31 735 aaPredicted RBP18.73■□□□□ 0.59
SNX1-208ENST00000559844 ZNF771Q7L3S4 317 aaPredicted RBP18.73■□□□□ 0.59
SNX1-208ENST00000559844 CCDC50Q8IVM0 306 aa18.73■□□□□ 0.59
SNX1-208ENST00000559844 NIPA2Q8N8Q9 360 aa18.73■□□□□ 0.59
SNX1-208ENST00000559844 RIN2Q8WYP3 895 aaPredicted RBP18.73■□□□□ 0.59
SNX1-208ENST00000559844 TOP1MTQ969P6 601 aa18.73■□□□□ 0.59
SNX1-208ENST00000559844 RBM41Q96IZ5 413 aaKnown RBP18.73■□□□□ 0.59
SNX1-208ENST00000559844 TRIM31Q9BZY9 425 aa18.73■□□□□ 0.59
SNX1-208ENST00000559844 UBN1Q9NPG3 1134 aa18.73■□□□□ 0.59
SNX1-208ENST00000559844 RNF19AQ9NV58 838 aa18.73■□□□□ 0.59
SNX1-208ENST00000559844 INPP5FQ9Y2H2 1132 aa18.73■□□□□ 0.59
SNX1-208ENST00000559844 GIT1Q9Y2X7 761 aa18.73■□□□□ 0.59
SNX1-208ENST00000559844 SLC4A7Q9Y6M7 1214 aa18.73■□□□□ 0.59
SNX1-208ENST00000559844 ARL5CA6NH57 179 aa18.73■□□□□ 0.59
SNX1-208ENST00000559844 RPL7AP62424 266 aaKnown RBP18.73■□□□□ 0.59
SNX1-208ENST00000559844 SHHQ15465 462 aa18.73■□□□□ 0.59
SNX1-208ENST00000559844 STILQ15468 1287 aa18.73■□□□□ 0.59
SNX1-208ENST00000559844 GLB1LQ6UWU2 654 aa18.73■□□□□ 0.59
SNX1-208ENST00000559844 RCOR2Q8IZ40 523 aa18.73■□□□□ 0.59
SNX1-208ENST00000559844 GRK7Q8WTQ7 553 aa18.73■□□□□ 0.59
SNX1-208ENST00000559844 ZBTB9Q96C00 473 aa18.73■□□□□ 0.59
SNX1-208ENST00000559844 TWNKQ96RR1 684 aa18.73■□□□□ 0.59
SNX1-208ENST00000559844 FMO2Q99518 471 aa18.73■□□□□ 0.59
SNX1-208ENST00000559844 FAM204AQ9H8W3 233 aa18.73■□□□□ 0.59
SNX1-208ENST00000559844 FEZ2Q9UHY8 353 aaPredicted RBP18.73■□□□□ 0.59
SNX1-208ENST00000559844 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.73■□□□□ 0.59
SNX1-208ENST00000559844 SIGLEC16A6NMB1 481 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 MICAL2O94851 1124 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 GJB6O95452 261 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 AFF1P51825 1210 aaKnown RBP18.72■□□□□ 0.59
SNX1-208ENST00000559844 GYS2P54840 703 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 ZNF268Q14587 947 aaPredicted RBP18.72■□□□□ 0.59
SNX1-208ENST00000559844 ZBTB6Q15916 424 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 PTPN20Q4JDL3 420 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 GLRA4Q5JXX5 417 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 ABI1Q8IZP0 508 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 LRRC52Q8N7C0 313 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 PIK3R5Q8WYR1 880 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 PKNOX2Q96KN3 472 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 HEXIM2Q96MH2 286 aaKnown RBP18.72■□□□□ 0.59
SNX1-208ENST00000559844 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.72■□□□□ 0.59
SNX1-208ENST00000559844 CNTN3Q9P232 1028 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 GOLGA6CA6NDK9 693 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 HOXA2O43364 376 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 GOLGA6DP0CG33 693 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 GATMP50440 423 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 CYP4A22Q5TCH4 519 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 ALKAL1Q6UXT8 129 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 FNIP1Q8TF40 1166 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 NT5C1AQ9BXI3 368 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 MIS12Q9H081 205 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 SYNCQ9H7C4 482 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 ZDHHC18Q9NUE0 388 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 DDX56Q9NY93 547 aaKnown RBP18.72■□□□□ 0.59
SNX1-208ENST00000559844 GOLGA6AQ9NYA3 693 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 HMGXB4Q9UGU5 601 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 UBQLN1Q9UMX0 589 aaKnown RBP18.72■□□□□ 0.59
SNX1-208ENST00000559844 SNX24Q9Y343 169 aa18.72■□□□□ 0.59
SNX1-208ENST00000559844 GBF1Q92538 1859 aa18.71■□□□□ 0.59
SNX1-208ENST00000559844 RANBP2P49792 3224 aaKnown RBP18.71■□□□□ 0.59
SNX1-208ENST00000559844 LAMA2P24043 3122 aaKnown RBP18.71■□□□□ 0.59
SNX1-208ENST00000559844 M0QYV0 167 aa18.71■□□□□ 0.59
SNX1-208ENST00000559844 XPOTO43592 962 aaKnown RBP18.71■□□□□ 0.59
SNX1-208ENST00000559844 HSD17B3P37058 310 aa18.71■□□□□ 0.59
SNX1-208ENST00000559844 NDST1P52848 882 aa18.71■□□□□ 0.59
SNX1-208ENST00000559844 COPS2P61201 443 aa18.71■□□□□ 0.59
SNX1-208ENST00000559844 ZNF252P-AS1Q0IIN9 211 aa18.71■□□□□ 0.59
SNX1-208ENST00000559844 RASIP1Q5U651 963 aa18.71■□□□□ 0.59
SNX1-208ENST00000559844 TMC3Q7Z5M5 1100 aa18.71■□□□□ 0.59
SNX1-208ENST00000559844 TMEM130Q8N3G9 435 aa18.71■□□□□ 0.59
SNX1-208ENST00000559844 GSTCDQ8NEC7 633 aa18.71■□□□□ 0.59
SNX1-208ENST00000559844 FAM76AQ8TAV0 307 aa18.71■□□□□ 0.59
SNX1-208ENST00000559844 SLC9A7Q96T83 725 aa18.71■□□□□ 0.59
SNX1-208ENST00000559844 OSBPL8Q9BZF1 889 aa18.71■□□□□ 0.59
SNX1-208ENST00000559844 MTRF1LQ9UGC7 380 aaKnown RBP18.71■□□□□ 0.59
SNX1-208ENST00000559844 O00370 1275 aa18.7■□□□□ 0.58
SNX1-208ENST00000559844 DGKIO75912 1065 aa18.7■□□□□ 0.58
SNX1-208ENST00000559844 RALAP11233 206 aa18.7■□□□□ 0.58
SNX1-208ENST00000559844 KRT3P12035 628 aa18.7■□□□□ 0.58
SNX1-208ENST00000559844 ATP2A2P16615 1042 aaKnown RBP18.7■□□□□ 0.58
SNX1-208ENST00000559844 GABRB2P47870 512 aa18.7■□□□□ 0.58
SNX1-208ENST00000559844 SCNN1GP51170 649 aa18.7■□□□□ 0.58
SNX1-208ENST00000559844 PSMC1P62191 440 aaKnown RBP18.7■□□□□ 0.58
SNX1-208ENST00000559844 PPP1R7Q15435 360 aa18.7■□□□□ 0.58
SNX1-208ENST00000559844 IPO4Q8TEX9 1081 aaKnown RBP18.7■□□□□ 0.58
SNX1-208ENST00000559844 C1orf54Q8WWF1 131 aa18.7■□□□□ 0.58
SNX1-208ENST00000559844 ZMAT2Q96NC0 199 aaKnown RBP18.7■□□□□ 0.58
SNX1-208ENST00000559844 DCLK3Q9C098 648 aa18.7■□□□□ 0.58
SNX1-208ENST00000559844 PLAAQ9Y263 795 aa18.7■□□□□ 0.58
SNX1-208ENST00000559844 COL4A6Q14031 1691 aa18.7■□□□□ 0.58
SNX1-208ENST00000559844 SMIM28A0A1B0GU29 152 aa18.7■□□□□ 0.58
SNX1-208ENST00000559844 PTGESO14684 152 aa18.7■□□□□ 0.58
SNX1-208ENST00000559844 POMCP01189 267 aa18.7■□□□□ 0.58
SNX1-208ENST00000559844 GJC1P36383 396 aa18.7■□□□□ 0.58
SNX1-208ENST00000559844 KLF1Q13351 362 aaPredicted RBP18.7■□□□□ 0.58
SNX1-208ENST00000559844 ORC1Q13415 861 aa18.7■□□□□ 0.58
SNX1-208ENST00000559844 CCNG2Q16589 344 aa18.7■□□□□ 0.58
SNX1-208ENST00000559844 ODF2Q5BJF6 829 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms