RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 SH3KBP1Q96B97 665 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 PAFAH2Q99487 392 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 KLF6Q99612 283 aaPredicted RBP12.99□□□□□ -0.33
COL4A6-209ENST00000545689 DCLK3Q9C098 648 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 AFF4Q9UHB7 1163 aaKnown RBP12.99□□□□□ -0.33
COL4A6-209ENST00000545689 COL5A2P05997 1499 aaPredicted RBP12.99□□□□□ -0.33
COL4A6-209ENST00000545689 BTNL10A8MVZ5 291 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 KIF2BQ8N4N8 673 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 GPRC5CQ9NQ84 441 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 DSEQ9UL01 958 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 MAGEA13PA6NCF6 341 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 E7ENQ6 273 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 H3BQF6 201 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 RRM1P23921 792 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 IL31Q6EBC2 164 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 C15orf52Q6ZUT6 534 aaKnown RBP12.99□□□□□ -0.33
COL4A6-209ENST00000545689 ARID3BQ8IVW6 561 aaPredicted RBP12.99□□□□□ -0.33
COL4A6-209ENST00000545689 SYTL5Q8TDW5 730 aaPredicted RBP12.99□□□□□ -0.33
COL4A6-209ENST00000545689 TAS1R2Q8TE23 839 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 PRMT6Q96LA8 375 aaPredicted RBP12.99□□□□□ -0.33
COL4A6-209ENST00000545689 NDUFA13Q9P0J0 144 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 SLC39A10Q9ULF5 831 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 ATRNO75882 1429 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 NKRFO15226 690 aaKnown RBP eCLIP12.99□□□□□ -0.33
COL4A6-209ENST00000545689 GLI1P08151 1106 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 RALBP11234 206 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 DSG1Q02413 1049 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 NFIAQ12857 509 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 AARS2Q5JTZ9 985 aaKnown RBP12.99□□□□□ -0.33
COL4A6-209ENST00000545689 FBXO25Q8TCJ0 367 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 ATG4AQ8WYN0 398 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 TMEM176AQ96HP8 235 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 PDCD2LQ9BRP1 358 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 PCDHA3Q9Y5H8 950 aa12.99□□□□□ -0.33
COL4A6-209ENST00000545689 DEAF1O75398 565 aaPredicted RBP12.98□□□□□ -0.33
COL4A6-209ENST00000545689 VCPP55072 806 aaKnown RBP12.98□□□□□ -0.33
COL4A6-209ENST00000545689 SMAD1Q15797 465 aaKnown RBP12.98□□□□□ -0.33
COL4A6-209ENST00000545689 SLC47A2Q86VL8 602 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 VGLL2Q8N8G2 317 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 WDCPQ9H6R7 721 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 OSGEPQ9NPF4 335 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 DMGDHQ9UI17 866 aaKnown RBP12.98□□□□□ -0.33
COL4A6-209ENST00000545689 USP18Q9UMW8 372 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 SRRM3A6NNA2 597 aaPredicted RBP12.98□□□□□ -0.33
COL4A6-209ENST00000545689 RIPK2O43353 540 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 HOXC6P09630 235 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 SZRD1Q7Z422 152 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 SLFN11Q7Z7L1 901 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 MSL3Q8N5Y2 521 aaKnown RBP12.98□□□□□ -0.33
COL4A6-209ENST00000545689 SLC20A1Q8WUM9 679 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 MTMR8Q96EF0 704 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 RXFP1Q9HBX9 757 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 M0QYT0 321 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 TGFB3P10600 412 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 PGM5Q15124 567 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 CYTH1Q15438 398 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 KIAA1683Q9H0B3 1180 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 BRD8Q9H0E9 1235 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 FBXO28Q9NVF7 368 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 CFAP99D6REC4 459 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 DPEP1P16444 411 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 HARS2P49590 506 aaKnown RBP12.98□□□□□ -0.33
COL4A6-209ENST00000545689 CACNB2Q08289 660 aaPredicted RBP12.98□□□□□ -0.33
COL4A6-209ENST00000545689 MTA1Q13330 715 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 ZNF268Q14587 947 aaPredicted RBP12.98□□□□□ -0.33
COL4A6-209ENST00000545689 ACAP1Q15027 740 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 MRNIPQ6NTE8 343 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 NT5DC4Q86YG4 428 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 MTMR9Q96QG7 549 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 HEY2Q9UBP5 337 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 SLC4A7Q9Y6M7 1214 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 MAGEB16A2A368 324 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 STAG3L1P0CL83 205 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 NAB1Q13506 487 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 JADE3Q92613 823 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 IDI2Q9BXS1 227 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 ADAM33Q9BZ11 813 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 MUC3BQ9H195 1237 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 CISHQ9NSE2 258 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 TAGLN3Q9UI15 199 aa12.98□□□□□ -0.33
COL4A6-209ENST00000545689 C6orf222P0C671 652 aaPredicted RBP12.97□□□□□ -0.33
COL4A6-209ENST00000545689 PRKAA2P54646 552 aa12.97□□□□□ -0.33
COL4A6-209ENST00000545689 SLC12A3P55017 1021 aa12.97□□□□□ -0.33
COL4A6-209ENST00000545689 COBLL1Q53SF7 1204 aa12.97□□□□□ -0.33
COL4A6-209ENST00000545689 METTL7BQ6UX53 244 aa12.97□□□□□ -0.33
COL4A6-209ENST00000545689 DENND5BQ6ZUT9 1274 aa12.97□□□□□ -0.33
COL4A6-209ENST00000545689 SV2AQ7L0J3 742 aa12.97□□□□□ -0.33
COL4A6-209ENST00000545689 KDELC2Q7Z4H8 507 aa12.97□□□□□ -0.33
COL4A6-209ENST00000545689 TMC3Q7Z5M5 1100 aa12.97□□□□□ -0.33
COL4A6-209ENST00000545689 FAM172AQ8WUF8 416 aa12.97□□□□□ -0.33
COL4A6-209ENST00000545689 SLC35C1Q96A29 364 aa12.97□□□□□ -0.33
COL4A6-209ENST00000545689 RRN3Q9NYV6 651 aa12.97□□□□□ -0.33
COL4A6-209ENST00000545689 EPHB2P29323 1055 aa12.97□□□□□ -0.33
COL4A6-209ENST00000545689 GTF2A2P52657 109 aa12.97□□□□□ -0.33
COL4A6-209ENST00000545689 DDI1Q8WTU0 396 aa12.97□□□□□ -0.33
COL4A6-209ENST00000545689 SLC24A3Q9HC58 644 aa12.97□□□□□ -0.33
COL4A6-209ENST00000545689 PKP3Q9Y446 797 aa12.97□□□□□ -0.33
COL4A6-209ENST00000545689 RPS6KL1Q9Y6S9 549 aa12.97□□□□□ -0.33
COL4A6-209ENST00000545689 KBTBD13C9JR72 458 aa12.97□□□□□ -0.33
COL4A6-209ENST00000545689 APOA1P02647 267 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms