RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 SMARCB1Q12824 385 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 ACAP1Q15027 740 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 USP41Q3LFD5 358 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 CFAP221Q4G0U5 840 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 CTXN3Q4LDR2 81 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 SPOUT1Q5T280 376 aaKnown RBP18.66■□□□□ 0.58
CLIP1-215ENST00000541108 OR6B2Q6IFH4 312 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 OLFML1Q6UWY5 402 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 FAM183BPQ6ZVS7 135 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 TMCO2Q7Z6W1 182 aaPredicted RBP18.66■□□□□ 0.58
CLIP1-215ENST00000541108 SCUBE3Q8IX30 993 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 UBL4BQ8N7F7 174 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 NIPA2Q8N8Q9 360 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 PHOSPHO2Q8TCD6 241 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 HERVK_113Q902F9 699 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 PBKQ96KB5 322 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.66■□□□□ 0.58
CLIP1-215ENST00000541108 TRIM7Q9C029 511 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 PNPLA8Q9NP80 782 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 INSL6Q9Y581 213 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 SPOPO43791 374 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 TBC1D4O60343 1298 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 SRGAP2O75044 1071 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 SLU7O95391 586 aaKnown RBP18.66■□□□□ 0.58
CLIP1-215ENST00000541108 MAP3K7CLP57077 242 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 FAM102AQ5T9C2 384 aaPredicted RBP18.66■□□□□ 0.58
CLIP1-215ENST00000541108 SPATA2LQ8IUW3 424 aaPredicted RBP18.66■□□□□ 0.58
CLIP1-215ENST00000541108 SLC39A11Q8N1S5 342 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 CEP112Q8N8E3 955 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 BCL7CQ8WUZ0 217 aaPredicted RBP18.66■□□□□ 0.58
CLIP1-215ENST00000541108 TMEM209Q96SK2 561 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 SMOQ99835 787 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 AAASQ9NRG9 546 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 CHST7Q9NS84 486 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 TMLHEQ9NVH6 421 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 STK39Q9UEW8 545 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 TMEM59LQ9UK28 342 aa18.66■□□□□ 0.58
CLIP1-215ENST00000541108 TMEM110-MUSTN1A8MSY1 372 aa18.65■□□□□ 0.58
CLIP1-215ENST00000541108 CTNNA2P26232 953 aa18.65■□□□□ 0.58
CLIP1-215ENST00000541108 CTNNA1P35221 906 aaKnown RBP18.65■□□□□ 0.58
CLIP1-215ENST00000541108 EPHB4P54760 987 aa18.65■□□□□ 0.58
CLIP1-215ENST00000541108 RAB41Q5JT25 222 aa18.65■□□□□ 0.58
CLIP1-215ENST00000541108 RTP2Q5QGT7 225 aa18.65■□□□□ 0.58
CLIP1-215ENST00000541108 CREG2Q8IUH2 290 aa18.65■□□□□ 0.58
CLIP1-215ENST00000541108 ZMIZ2Q8NF64 920 aa18.65■□□□□ 0.58
CLIP1-215ENST00000541108 TMEM169Q96HH4 297 aa18.65■□□□□ 0.58
CLIP1-215ENST00000541108 SLC9A7Q96T83 725 aa18.65■□□□□ 0.58
CLIP1-215ENST00000541108 CARD9Q9H257 536 aa18.65■□□□□ 0.58
CLIP1-215ENST00000541108 LRRC4Q9HBW1 653 aa18.65■□□□□ 0.58
CLIP1-215ENST00000541108 DMAP1Q9NPF5 467 aaPredicted RBP18.65■□□□□ 0.58
CLIP1-215ENST00000541108 METTL5Q9NRN9 209 aaKnown RBP18.65■□□□□ 0.58
CLIP1-215ENST00000541108 PCDHA3Q9Y5H8 950 aa18.65■□□□□ 0.58
CLIP1-215ENST00000541108 MRPL42Q9Y6G3 142 aaKnown RBP18.65■□□□□ 0.58
CLIP1-215ENST00000541108 PTPRSQ13332 1948 aa18.64■□□□□ 0.58
CLIP1-215ENST00000541108 KCNK3O14649 394 aa18.64■□□□□ 0.57
CLIP1-215ENST00000541108 DDX3YO15523 660 aaKnown RBP18.64■□□□□ 0.57
CLIP1-215ENST00000541108 GJB6O95452 261 aa18.64■□□□□ 0.57
CLIP1-215ENST00000541108 BDNFP23560 247 aa18.64■□□□□ 0.57
CLIP1-215ENST00000541108 PPM1AP35813 382 aa18.64■□□□□ 0.57
CLIP1-215ENST00000541108 SLC39A12Q504Y0 691 aa18.64■□□□□ 0.57
CLIP1-215ENST00000541108 EFHC1Q5JVL4 640 aa18.64■□□□□ 0.57
CLIP1-215ENST00000541108 SLC26A9Q7LBE3 791 aa18.64■□□□□ 0.57
CLIP1-215ENST00000541108 MYRIPQ8NFW9 859 aa18.64■□□□□ 0.57
CLIP1-215ENST00000541108 JOSD2Q8TAC2 188 aa18.64■□□□□ 0.57
CLIP1-215ENST00000541108 COG1Q8WTW3 980 aa18.64■□□□□ 0.57
CLIP1-215ENST00000541108 KCNK16Q96T55 309 aa18.64■□□□□ 0.57
CLIP1-215ENST00000541108 LBHD1Q9BQE6 289 aaPredicted RBP18.64■□□□□ 0.57
CLIP1-215ENST00000541108 MTIF3Q9H2K0 278 aaKnown RBP18.64■□□□□ 0.57
CLIP1-215ENST00000541108 SPG21Q9NZD8 308 aa18.64■□□□□ 0.57
CLIP1-215ENST00000541108 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.64■□□□□ 0.57
CLIP1-215ENST00000541108 PIK3R2O00459 728 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 FBXO21O94952 628 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 SOD2P04179 222 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 LCP1P13796 627 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 SYN1P17600 705 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 PTPRDP23468 1912 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 CXCR5P32302 372 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 PEX5P50542 639 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 ZNF143P52747 638 aaPredicted RBP18.63■□□□□ 0.57
CLIP1-215ENST00000541108 OGDHQ02218 1023 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 CKAP4Q07065 602 aaKnown RBP18.63■□□□□ 0.57
CLIP1-215ENST00000541108 ZNF252P-AS1Q0IIN9 211 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 GPR17Q13304 367 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 VSTM1Q6UX27 236 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 TAS1R1Q7RTX1 841 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 NLRC5Q86WI3 1866 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 COLGALT1Q8NBJ5 622 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 MNS1Q8NEH6 495 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 PIK3R5Q8WYR1 880 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 KHSRPQ92945 711 aaKnown RBP eCLIP18.63■□□□□ 0.57
CLIP1-215ENST00000541108 RPGRIP1Q96KN7 1286 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 PSMB7Q99436 277 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 ZBED2Q9BTP6 218 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 CNGB3Q9NQW8 809 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 CXXC1Q9P0U4 656 aaPredicted RBP18.63■□□□□ 0.57
CLIP1-215ENST00000541108 BACE2Q9Y5Z0 518 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 SLC4A7Q9Y6M7 1214 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 C2CD4BA6NLJ0 364 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 HHLA1C9JL84 531 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 ZNF185O15231 689 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms