RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 AVILO75366 819 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 USP1O94782 785 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 ATP5OP48047 213 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 GCLCP48506 637 aaPredicted RBP11.76□□□□□ -0.53
SYNE1-237ENST00000539504 INHBEP58166 350 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 AP2B1P63010 937 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 PRKD1Q15139 912 aaPredicted RBP11.76□□□□□ -0.53
SYNE1-237ENST00000539504 CHI3L2Q15782 390 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 RIPOR1Q6ZS17 1223 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 IGDCC3Q8IVU1 814 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 NAT8LQ8N9F0 302 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 FBXO27Q8NI29 283 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 FAF2Q96CS3 445 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 TMEM39BQ9GZU3 492 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 ZNF395Q9H8N7 513 aaPredicted RBP11.76□□□□□ -0.53
SYNE1-237ENST00000539504 C17orf75Q9HAS0 396 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 KRT82Q9NSB4 513 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 SYNPO2Q9UMS6 1093 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 SIGLEC16A6NMB1 481 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 A8MXQ7 604 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 CD48P09326 243 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 KRT3P12035 628 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 RFC1P35251 1148 aaPredicted RBP11.75□□□□□ -0.53
SYNE1-237ENST00000539504 DGKZQ13574 1117 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 KRT72Q14CN4 511 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 DPH6Q7L8W6 267 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 TAS1R3Q7RTX0 852 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 ZBTB33Q86T24 672 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 NUDCD3Q8IVD9 361 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 ZNF276Q8N554 614 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 HIPK4Q8NE63 616 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 PDCD2LQ9BRP1 358 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 NTPCRQ9BSD7 190 aaKnown RBP11.75□□□□□ -0.53
SYNE1-237ENST00000539504 PDP2Q9P2J9 529 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 ZNF541Q9H0D2 1346 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 E5RJQ4 531 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 ANPEPP15144 967 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 YY1P25490 414 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 AQP5P55064 265 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 PRKCEQ02156 737 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 DSG1Q02413 1049 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 BST1Q10588 318 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 TRPC3Q13507 836 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 BMPR2Q13873 1038 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 FAXCQ5TGI0 409 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 SPATA18Q8TC71 538 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 E2F7Q96AV8 911 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 WDR83Q9BRX9 315 aaKnown RBP11.75□□□□□ -0.53
SYNE1-237ENST00000539504 MMADHCQ9H3L0 296 aaPredicted RBP11.75□□□□□ -0.53
SYNE1-237ENST00000539504 GREB1LQ9C091 1923 aaPredicted RBP11.75□□□□□ -0.53
SYNE1-237ENST00000539504 TAF1LQ8IZX4 1826 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 H0YCG3 227 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 DNAJC6O75061 913 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 KRT37O76014 449 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 KRT7P08729 469 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 ATG16L1Q676U5 607 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 SCARA3Q6AZY7 606 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 TREML1Q86YW5 311 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 CRLF3Q8IUI8 442 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.75□□□□□ -0.53
SYNE1-237ENST00000539504 TRAPPC9Q96Q05 1148 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 WWP1Q9H0M0 922 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 XPNPEP1Q9NQW7 623 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 FBXO40Q9UH90 709 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 ZNF536O15090 1300 aa11.75□□□□□ -0.53
SYNE1-237ENST00000539504 MEI4A8MW99 385 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 TXNDC9O14530 226 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 MMP10P09238 476 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 PSMC1P62191 440 aaKnown RBP11.74□□□□□ -0.53
SYNE1-237ENST00000539504 CUL3Q13618 768 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 CYP26B1Q9NR63 512 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 NXF1Q9UBU9 619 aaKnown RBP11.74□□□□□ -0.53
SYNE1-237ENST00000539504 CYB561D2O14569 222 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 DKC1O60832 514 aaKnown RBP eCLIP11.74□□□□□ -0.53
SYNE1-237ENST00000539504 TOM1L1O75674 476 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 TGDSO95455 350 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 PSAPP07602 524 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 LYNP07948 512 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 EPHB1P54762 984 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 DPYSL3Q14195 570 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 LGSNQ5TDP6 509 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 CHSY1Q86X52 802 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 MZB1Q8WU39 189 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 RAB6BQ9NRW1 208 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 FETUBQ9UGM5 382 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 STRIP2Q9ULQ0 834 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 TELO2Q9Y4R8 837 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 MAD1L1Q9Y6D9 718 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 RAD17O75943 681 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 GSTT1P30711 240 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 POLR2BP30876 1174 aaKnown RBP11.74□□□□□ -0.53
SYNE1-237ENST00000539504 PTGER2P43116 358 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 MTMR2Q13614 643 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 BAATQ14032 418 aaPredicted RBP11.74□□□□□ -0.53
SYNE1-237ENST00000539504 FOXB2Q5VYV0 432 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 NPNTQ6UXI9 565 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 CDHR3Q6ZTQ4 885 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 TRIM42Q8IWZ5 723 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 ULK2Q8IYT8 1036 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 JOSD2Q8TAC2 188 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms