RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 CREB3L3Q68CJ9 461 aa9.9□□□□□ -0.82
USP28-205ENST00000537706 NEK8Q86SG6 692 aa9.9□□□□□ -0.82
USP28-205ENST00000537706 TRIM22Q8IYM9 498 aa9.9□□□□□ -0.82
USP28-205ENST00000537706 LSMEM2Q8N112 164 aa9.9□□□□□ -0.82
USP28-205ENST00000537706 CEP120Q8N960 986 aa9.9□□□□□ -0.82
USP28-205ENST00000537706 OXER1Q8TDS5 423 aa9.9□□□□□ -0.82
USP28-205ENST00000537706 PIGOQ8TEQ8 1089 aa9.9□□□□□ -0.82
USP28-205ENST00000537706 IPO4Q8TEX9 1081 aaKnown RBP9.9□□□□□ -0.82
USP28-205ENST00000537706 MRPL4Q9BYD3 311 aaKnown RBP9.9□□□□□ -0.82
USP28-205ENST00000537706 DPH1Q9BZG8 443 aa9.9□□□□□ -0.82
USP28-205ENST00000537706 ZCWPW1Q9H0M4 648 aa9.9□□□□□ -0.82
USP28-205ENST00000537706 GMIPQ9P107 970 aa9.9□□□□□ -0.82
USP28-205ENST00000537706 UBQLN1Q9UMX0 589 aaKnown RBP9.9□□□□□ -0.82
USP28-205ENST00000537706 PCDHB6Q9Y5E3 794 aa9.9□□□□□ -0.82
USP28-205ENST00000537706 PLXND1Q9Y4D7 1925 aa9.9□□□□□ -0.82
USP28-205ENST00000537706 A0A1B0GVT2 93 aa9.9□□□□□ -0.83
USP28-205ENST00000537706 HMGA1P17096 107 aaKnown RBP9.9□□□□□ -0.83
USP28-205ENST00000537706 HDCP19113 662 aa9.9□□□□□ -0.83
USP28-205ENST00000537706 CYP3A5P20815 502 aa9.9□□□□□ -0.83
USP28-205ENST00000537706 OXTRP30559 389 aa9.9□□□□□ -0.83
USP28-205ENST00000537706 AARSP49588 968 aaKnown RBP eCLIP9.9□□□□□ -0.83
USP28-205ENST00000537706 AFF3P51826 1226 aaKnown RBP9.9□□□□□ -0.83
USP28-205ENST00000537706 SMC5Q8IY18 1101 aa9.9□□□□□ -0.83
USP28-205ENST00000537706 FAM177A1Q8N128 213 aaPredicted RBP9.9□□□□□ -0.83
USP28-205ENST00000537706 CACTIN-AS1Q8N1I8 211 aa9.9□□□□□ -0.83
USP28-205ENST00000537706 ARL14EPQ8N8R7 260 aaPredicted RBP9.9□□□□□ -0.83
USP28-205ENST00000537706 IGSF8Q969P0 613 aa9.9□□□□□ -0.83
USP28-205ENST00000537706 TUBGCP4Q9UGJ1 667 aa9.9□□□□□ -0.83
USP28-205ENST00000537706 COL6A6A6NMZ7 2263 aa9.89□□□□□ -0.83
USP28-205ENST00000537706 PRPF40AO75400 957 aaKnown RBP9.89□□□□□ -0.83
USP28-205ENST00000537706 ADH5P11766 374 aa9.89□□□□□ -0.83
USP28-205ENST00000537706 HARSP12081 509 aaKnown RBP9.89□□□□□ -0.83
USP28-205ENST00000537706 CR2P20023 1033 aa9.89□□□□□ -0.83
USP28-205ENST00000537706 GLDCP23378 1020 aa9.89□□□□□ -0.83
USP28-205ENST00000537706 GAD2Q05329 585 aa9.89□□□□□ -0.83
USP28-205ENST00000537706 C10orf76Q5T2E6 689 aa9.89□□□□□ -0.83
USP28-205ENST00000537706 PADI6Q6TGC4 694 aa9.89□□□□□ -0.83
USP28-205ENST00000537706 CENPQQ7L2Z9 268 aaPredicted RBP9.89□□□□□ -0.83
USP28-205ENST00000537706 SNRNP27Q8WVK2 155 aaKnown RBP9.89□□□□□ -0.83
USP28-205ENST00000537706 TRMT2BQ96GJ1 504 aaKnown RBP9.89□□□□□ -0.83
USP28-205ENST00000537706 TOE1Q96GM8 510 aaKnown RBP9.89□□□□□ -0.83
USP28-205ENST00000537706 CNDP2Q96KP4 475 aaKnown RBP9.89□□□□□ -0.83
USP28-205ENST00000537706 SENP8Q96LD8 212 aa9.89□□□□□ -0.83
USP28-205ENST00000537706 CYP2S1Q96SQ9 504 aa9.89□□□□□ -0.83
USP28-205ENST00000537706 ACO2Q99798 780 aaKnown RBP9.89□□□□□ -0.83
USP28-205ENST00000537706 HSD17B14Q9BPX1 270 aa9.89□□□□□ -0.83
USP28-205ENST00000537706 GPR174Q9BXC1 333 aa9.89□□□□□ -0.83
USP28-205ENST00000537706 PLEKHA5Q9HAU0 1116 aa9.89□□□□□ -0.83
USP28-205ENST00000537706 ZDHHC4Q9NPG8 344 aa9.89□□□□□ -0.83
USP28-205ENST00000537706 ARHGEF35A5YM69 484 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 ANTXRLA6NF34 631 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 BTBD18B2RXH4 712 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 KLK10O43240 276 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 SFTPCP11686 197 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 MYF5P13349 255 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 TNFSF9P41273 254 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 WASP42768 502 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 AAMPQ13685 434 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 TTC22Q5TAA0 569 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 MPZL3Q6UWV2 235 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 USP49Q70CQ1 688 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 FILIP1Q7Z7B0 1213 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 DDX42Q86XP3 938 aaKnown RBP eCLIP9.88□□□□□ -0.83
USP28-205ENST00000537706 CHPFQ8IZ52 775 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 BSNDQ8WZ55 320 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 HAS1Q92839 578 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 TBC1D14Q9P2M4 693 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 DEC1Q9P2X7 70 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 PCDHA12Q9UN75 941 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 METTL12A8MUP2 240 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 LEFTY2O00292 366 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 NOL4O94818 638 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 EDN1P05305 212 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 HMGB1P09429 215 aaKnown RBP9.88□□□□□ -0.83
USP28-205ENST00000537706 ATP2C1P98194 919 aaPredicted RBP9.88□□□□□ -0.83
USP28-205ENST00000537706 TSPY1Q01534 308 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 EXOSC10Q01780 885 aaKnown RBP9.88□□□□□ -0.83
USP28-205ENST00000537706 ILKQ13418 452 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 STARD3Q14849 445 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 NFE2Q16621 373 aaPredicted RBP9.88□□□□□ -0.83
USP28-205ENST00000537706 GAB4Q2WGN9 574 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 ADAT2Q7Z6V5 191 aaKnown RBP9.88□□□□□ -0.83
USP28-205ENST00000537706 METTL3Q86U44 580 aaKnown RBP9.88□□□□□ -0.83
USP28-205ENST00000537706 ADGRG2Q8IZP9 1017 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 OR10T2Q8NGX3 314 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 SCFD1Q8WVM8 642 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 SNX19Q92543 992 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 KIFAP3Q92845 792 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 ZFRQ96KR1 1074 aaKnown RBP9.88□□□□□ -0.83
USP28-205ENST00000537706 TSPAN18Q96SJ8 248 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 ARHGAP9Q9BRR9 750 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 PCED1AQ9H1Q7 454 aa9.88□□□□□ -0.83
USP28-205ENST00000537706 WSB2Q9NYS7 404 aaPredicted RBP9.88□□□□□ -0.83
USP28-205ENST00000537706 EIF2B4Q9UI10 523 aaKnown RBP9.88□□□□□ -0.83
USP28-205ENST00000537706 FREM2Q5SZK8 3169 aa9.87□□□□□ -0.83
USP28-205ENST00000537706 CYP11B2P19099 503 aa9.87□□□□□ -0.83
USP28-205ENST00000537706 CSNK1EP49674 416 aaKnown RBP9.87□□□□□ -0.83
USP28-205ENST00000537706 INHBCP55103 352 aa9.87□□□□□ -0.83
USP28-205ENST00000537706 BNC1Q01954 994 aa9.87□□□□□ -0.83
USP28-205ENST00000537706 MAPK8IP2Q13387 824 aaPredicted RBP9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms