RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 DUS2Q9NX74 493 aaKnown RBP14□□□□□ -0.17
RTN3-207ENST00000536011 RCOR1Q9UKL0 485 aa14□□□□□ -0.17
RTN3-207ENST00000536011 USP18Q9UMW8 372 aa14□□□□□ -0.17
RTN3-207ENST00000536011 ARHGAP26Q9UNA1 814 aa14□□□□□ -0.17
RTN3-207ENST00000536011 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.99□□□□□ -0.17
RTN3-207ENST00000536011 A8MXQ7 604 aa13.99□□□□□ -0.17
RTN3-207ENST00000536011 CHURC1-FNTBB4DL54 471 aa13.99□□□□□ -0.17
RTN3-207ENST00000536011 K7ESF4 209 aa13.99□□□□□ -0.17
RTN3-207ENST00000536011 NFATC1O95644 943 aa13.99□□□□□ -0.17
RTN3-207ENST00000536011 RETP07949 1114 aa13.99□□□□□ -0.17
RTN3-207ENST00000536011 P4HA1P13674 534 aa13.99□□□□□ -0.17
RTN3-207ENST00000536011 TCF3P15923 654 aa13.99□□□□□ -0.17
RTN3-207ENST00000536011 HDCP19113 662 aa13.99□□□□□ -0.17
RTN3-207ENST00000536011 TRIM21P19474 475 aaKnown RBP13.99□□□□□ -0.17
RTN3-207ENST00000536011 CASP1P29466 404 aa13.99□□□□□ -0.17
RTN3-207ENST00000536011 FNTBP49356 437 aa13.99□□□□□ -0.17
RTN3-207ENST00000536011 DNM1Q05193 864 aaKnown RBP13.99□□□□□ -0.17
RTN3-207ENST00000536011 CCDC142Q17RM4 750 aa13.99□□□□□ -0.17
RTN3-207ENST00000536011 SCARA3Q6AZY7 606 aa13.99□□□□□ -0.17
RTN3-207ENST00000536011 TRIM68Q6AZZ1 485 aa13.99□□□□□ -0.17
RTN3-207ENST00000536011 CEP68Q76N32 757 aa13.99□□□□□ -0.17
RTN3-207ENST00000536011 WDR5BQ86VZ2 330 aa13.99□□□□□ -0.17
RTN3-207ENST00000536011 KIAA1958Q8N8K9 716 aa13.99□□□□□ -0.17
RTN3-207ENST00000536011 B3GALNT2Q8NCR0 500 aa13.99□□□□□ -0.17
RTN3-207ENST00000536011 SLITRK1Q96PX8 696 aa13.99□□□□□ -0.17
RTN3-207ENST00000536011 P2RY13Q9BPV8 354 aa13.99□□□□□ -0.17
RTN3-207ENST00000536011 TTLL2Q9BWV7 592 aa13.99□□□□□ -0.17
RTN3-207ENST00000536011 ECT2Q9H8V3 914 aa13.99□□□□□ -0.17
RTN3-207ENST00000536011 DLL3Q9NYJ7 618 aa13.99□□□□□ -0.17
RTN3-207ENST00000536011 NXF1Q9UBU9 619 aaKnown RBP13.99□□□□□ -0.17
RTN3-207ENST00000536011 CDV3Q9UKY7 258 aaKnown RBP13.99□□□□□ -0.17
RTN3-207ENST00000536011 SLC8A2Q9UPR5 921 aa13.99□□□□□ -0.17
RTN3-207ENST00000536011 CCDC163A0A0D9SF12 145 aa13.98□□□□□ -0.17
RTN3-207ENST00000536011 CST3P01034 146 aaPredicted RBP13.98□□□□□ -0.17
RTN3-207ENST00000536011 ARSAP15289 507 aa13.98□□□□□ -0.17
RTN3-207ENST00000536011 PTPN1P18031 435 aaKnown RBP13.98□□□□□ -0.17
RTN3-207ENST00000536011 CLCN6P51797 869 aa13.98□□□□□ -0.17
RTN3-207ENST00000536011 KRT85P78386 507 aa13.98□□□□□ -0.17
RTN3-207ENST00000536011 RSPO4Q2I0M5 234 aaPredicted RBP13.98□□□□□ -0.17
RTN3-207ENST00000536011 ZNF699Q32M78 642 aa13.98□□□□□ -0.17
RTN3-207ENST00000536011 WDR44Q5JSH3 913 aa13.98□□□□□ -0.17
RTN3-207ENST00000536011 TDRD10Q5VZ19 366 aaKnown RBP13.98□□□□□ -0.17
RTN3-207ENST00000536011 HEATR6Q6AI08 1181 aaKnown RBP13.98□□□□□ -0.17
RTN3-207ENST00000536011 SLC9A9Q8IVB4 645 aa13.98□□□□□ -0.17
RTN3-207ENST00000536011 ARL14EPQ8N8R7 260 aaPredicted RBP13.98□□□□□ -0.17
RTN3-207ENST00000536011 PDZD8Q8NEN9 1154 aa13.98□□□□□ -0.17
RTN3-207ENST00000536011 SH3RF2Q8TEC5 729 aa13.98□□□□□ -0.17
RTN3-207ENST00000536011 TMEM174Q8WUU8 243 aa13.98□□□□□ -0.17
RTN3-207ENST00000536011 ACDQ96AP0 544 aa13.98□□□□□ -0.17
RTN3-207ENST00000536011 TNIP3Q96KP6 325 aa13.98□□□□□ -0.17
RTN3-207ENST00000536011 CYP2S1Q96SQ9 504 aa13.98□□□□□ -0.17
RTN3-207ENST00000536011 MRPL45Q9BRJ2 306 aaKnown RBP13.98□□□□□ -0.17
RTN3-207ENST00000536011 VRTNQ9H8Y1 702 aa13.98□□□□□ -0.17
RTN3-207ENST00000536011 GCNT4Q9P109 453 aa13.98□□□□□ -0.17
RTN3-207ENST00000536011 SERTAD1Q9UHV2 236 aa13.98□□□□□ -0.17
RTN3-207ENST00000536011 ATP6V1DQ9Y5K8 247 aa13.98□□□□□ -0.17
RTN3-207ENST00000536011 C2orf78A6NCI8 922 aa13.97□□□□□ -0.17
RTN3-207ENST00000536011 F8VP50 259 aa13.97□□□□□ -0.17
RTN3-207ENST00000536011 PDXKO00764 312 aa13.97□□□□□ -0.17
RTN3-207ENST00000536011 SLC9A3R1O14745 358 aaPredicted RBP13.97□□□□□ -0.17
RTN3-207ENST00000536011 ACTN4O43707 911 aaKnown RBP13.97□□□□□ -0.17
RTN3-207ENST00000536011 RTN3O95197 1032 aaPredicted RBP13.97□□□□□ -0.17
RTN3-207ENST00000536011 PFKFB1P16118 471 aa13.97□□□□□ -0.17
RTN3-207ENST00000536011 CMA1P23946 247 aa13.97□□□□□ -0.17
RTN3-207ENST00000536011 GJA4P35212 333 aa13.97□□□□□ -0.17
RTN3-207ENST00000536011 MYL6P60660 151 aa13.97□□□□□ -0.17
RTN3-207ENST00000536011 NCOA4Q13772 614 aa13.97□□□□□ -0.17
RTN3-207ENST00000536011 LPAL2Q16609 132 aa13.97□□□□□ -0.17
RTN3-207ENST00000536011 ZNF667Q5HYK9 610 aa13.97□□□□□ -0.17
RTN3-207ENST00000536011 FSTL4Q6MZW2 842 aa13.97□□□□□ -0.17
RTN3-207ENST00000536011 DDX42Q86XP3 938 aaKnown RBP eCLIP13.97□□□□□ -0.17
RTN3-207ENST00000536011 GRAMD1CQ8IYS0 662 aa13.97□□□□□ -0.17
RTN3-207ENST00000536011 CAMKK1Q8N5S9 505 aa13.97□□□□□ -0.17
RTN3-207ENST00000536011 PARD3BQ8TEW8 1205 aa13.97□□□□□ -0.17
RTN3-207ENST00000536011 CD101Q93033 1021 aa13.97□□□□□ -0.17
RTN3-207ENST00000536011 PAGE5Q96GU1 130 aa13.97□□□□□ -0.17
RTN3-207ENST00000536011 CCDC34Q96HJ3 373 aa13.97□□□□□ -0.17
RTN3-207ENST00000536011 SPATA32Q96LK8 384 aa13.97□□□□□ -0.17
RTN3-207ENST00000536011 SLC22A12Q96S37 553 aa13.97□□□□□ -0.17
RTN3-207ENST00000536011 XYLT2Q9H1B5 865 aa13.97□□□□□ -0.17
RTN3-207ENST00000536011 FRMD4BQ9Y2L6 1034 aa13.97□□□□□ -0.17
RTN3-207ENST00000536011 WNT6Q9Y6F9 365 aa13.97□□□□□ -0.17
RTN3-207ENST00000536011 PTPRDP23468 1912 aa13.96□□□□□ -0.17
RTN3-207ENST00000536011 OTOL1A6NHN0 477 aaPredicted RBP13.96□□□□□ -0.17
RTN3-207ENST00000536011 CALUO43852 315 aaPredicted RBP13.96□□□□□ -0.17
RTN3-207ENST00000536011 RNF40O75150 1001 aa13.96□□□□□ -0.17
RTN3-207ENST00000536011 AKAP3O75969 853 aa13.96□□□□□ -0.17
RTN3-207ENST00000536011 RPN1P04843 607 aaKnown RBP13.96□□□□□ -0.17
RTN3-207ENST00000536011 CLDN10P78369 228 aa13.96□□□□□ -0.17
RTN3-207ENST00000536011 SLC7A9P82251 487 aa13.96□□□□□ -0.17
RTN3-207ENST00000536011 DMWDQ09019 674 aa13.96□□□□□ -0.17
RTN3-207ENST00000536011 STK4Q13043 487 aa13.96□□□□□ -0.17
RTN3-207ENST00000536011 PKP1Q13835 747 aa13.96□□□□□ -0.17
RTN3-207ENST00000536011 EML3Q32P44 896 aa13.96□□□□□ -0.17
RTN3-207ENST00000536011 SPRYD3Q8NCJ5 442 aa13.96□□□□□ -0.17
RTN3-207ENST00000536011 RIN3Q8TB24 985 aa13.96□□□□□ -0.17
RTN3-207ENST00000536011 OVCA2Q8WZ82 227 aa13.96□□□□□ -0.17
RTN3-207ENST00000536011 TAF4BQ92750 862 aa13.96□□□□□ -0.17
RTN3-207ENST00000536011 DNAI2Q9GZS0 605 aa13.96□□□□□ -0.17
RTN3-207ENST00000536011 HELZP42694 1942 aaKnown RBP13.96□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms