RNA–Protein interactions for RNA: ENST00000486991.1

NR1H3-223, Transcript of nuclear receptor subfamily 1 group H member 3, human

TSL 4

Gene NR1H3, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1H3-223	ENST00000486991	GJB7	Q6PEY0	223 aa		13.92	□□□□□ -0.18
NR1H3-223	ENST00000486991	ZC3H14	Q6PJT7	736 aa	Known RBP	13.92	□□□□□ -0.18
NR1H3-223	ENST00000486991	SCARA5	Q6ZMJ2	495 aa		13.92	□□□□□ -0.18
NR1H3-223	ENST00000486991	DGLUCY	Q7Z3D6	616 aa		13.92	□□□□□ -0.18
NR1H3-223	ENST00000486991	TMC6	Q7Z403	805 aa		13.92	□□□□□ -0.18
NR1H3-223	ENST00000486991	VSTM4	Q8IW00	320 aa		13.92	□□□□□ -0.18
NR1H3-223	ENST00000486991	ARHGEF19	Q8IW93	802 aa		13.92	□□□□□ -0.18
NR1H3-223	ENST00000486991	DRC7	Q8IY82	874 aa		13.92	□□□□□ -0.18
NR1H3-223	ENST00000486991	PPM1K	Q8N3J5	372 aa		13.92	□□□□□ -0.18
NR1H3-223	ENST00000486991	LEMD2	Q8NC56	503 aa		13.92	□□□□□ -0.18
NR1H3-223	ENST00000486991	TATDN2	Q93075	761 aa		13.92	□□□□□ -0.18
NR1H3-223	ENST00000486991	ZSWIM3	Q96MP5	696 aa		13.92	□□□□□ -0.18
NR1H3-223	ENST00000486991	NIF3L1	Q9GZT8	377 aa		13.92	□□□□□ -0.18
NR1H3-223	ENST00000486991	CYP4F11	Q9HBI6	524 aa		13.92	□□□□□ -0.18
NR1H3-223	ENST00000486991	APOBEC3G	Q9HC16	384 aa	Known RBP	13.92	□□□□□ -0.18
NR1H3-223	ENST00000486991	SIX2	Q9NPC8	291 aa		13.92	□□□□□ -0.18
NR1H3-223	ENST00000486991	CEP72	Q9P209	647 aa		13.92	□□□□□ -0.18
NR1H3-223	ENST00000486991	SNX9	Q9Y5X1	595 aa		13.92	□□□□□ -0.18
NR1H3-223	ENST00000486991	MTMR11	A4FU01	709 aa		13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	CYB561D2	O14569	222 aa		13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	MOSPD3	O75425	235 aa		13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	ECI2	O75521	394 aa		13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	P4HA1	P13674	534 aa		13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	TRIM21	P19474	475 aa	Known RBP	13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	EPHA5	P54756	1037 aa		13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	PLD1	Q13393	1074 aa		13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	FAM78A	Q5JUQ0	283 aa		13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	KLHDC7A	Q5VTJ3	777 aa		13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	SPECC1L	Q69YQ0	1117 aa		13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	RRAGA	Q7L523	313 aa		13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	LIMS2	Q7Z4I7	341 aa		13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	METTL23	Q86XA0	190 aa		13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	GPIHBP1	Q8IV16	184 aa		13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	ANP32B	Q92688	251 aa	Known RBP	13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	ZNF512	Q96ME7	567 aa	Predicted RBP	13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	MMS19	Q96T76	1030 aa		13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	LRRC3	Q9BY71	257 aa		13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	GAN	Q9H2C0	597 aa		13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	VRTN	Q9H8Y1	702 aa		13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	UBE2T	Q9NPD8	197 aa	Predicted RBP	13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	PLCB1	Q9NQ66	1216 aa		13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	APEX2	Q9UBZ4	518 aa		13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	NDRG2	Q9UN36	371 aa	Known RBP	13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	L1RE1	Q9UN81	338 aa		13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	YIPF1	Q9Y548	306 aa		13.91	□□□□□ -0.18
NR1H3-223	ENST00000486991	NCAN	O14594	1321 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	EPHB6	O15197	1021 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	HUS1	O60921	280 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	VIPR2	P41587	438 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	POLR2F	P61218	127 aa	Known RBP	13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	PFKP	Q01813	784 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	CUL2	Q13617	745 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	ARHGAP44	Q17R89	818 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	RSPO4	Q2I0M5	234 aa	Predicted RBP	13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	CYP4A22	Q5TCH4	519 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	DPY19L2P1	Q6NXN4	242 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	CACNA2D4	Q7Z3S7	1137 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	LRRTM3	Q86VH5	581 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	THEM5	Q8N1Q8	247 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	PDCL2	Q8N4E4	241 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	ATAD1	Q8NBU5	361 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	KAT5	Q92993	513 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	CLDN23	Q96B33	292 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	PGLYRP2	Q96PD5	576 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	PKMYT1	Q99640	499 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	ZCWPW1	Q9H0M4	648 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	SMYD3	Q9H7B4	428 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	NLRC4	Q9NPP4	1024 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	GDAP2	Q9NXN4	497 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	GDE1	Q9NZC3	331 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	DNAJC12	Q9UKB3	198 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	FBXO4	Q9UKT5	387 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	FHOD1	Q9Y613	1164 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	CEP250	Q9BV73	2442 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	TICRR	Q7Z2Z1	1910 aa		13.9	□□□□□ -0.18
NR1H3-223	ENST00000486991	ITIH6	Q6UXX5	1313 aa		13.9	□□□□□ -0.19
NR1H3-223	ENST00000486991	NOL4	O94818	638 aa		13.89	□□□□□ -0.19
NR1H3-223	ENST00000486991	MICAL2	O94851	1124 aa		13.89	□□□□□ -0.19
NR1H3-223	ENST00000486991	UCHL3	P15374	230 aa		13.89	□□□□□ -0.19
NR1H3-223	ENST00000486991	TBXAS1	P24557	533 aa	Predicted RBP	13.89	□□□□□ -0.19
NR1H3-223	ENST00000486991	CDC25B	P30305	580 aa		13.89	□□□□□ -0.19
NR1H3-223	ENST00000486991	ASPA	P45381	313 aa		13.89	□□□□□ -0.19
NR1H3-223	ENST00000486991	RAP1GAP	P47736	663 aa		13.89	□□□□□ -0.19
NR1H3-223	ENST00000486991	MFAP3	P55082	362 aa		13.89	□□□□□ -0.19
NR1H3-223	ENST00000486991	TWF1	Q12792	350 aa		13.89	□□□□□ -0.19
NR1H3-223	ENST00000486991	SMARCB1	Q12824	385 aa		13.89	□□□□□ -0.19
NR1H3-223	ENST00000486991	DUSP4	Q13115	394 aa		13.89	□□□□□ -0.19
NR1H3-223	ENST00000486991	MTAP	Q13126	283 aa		13.89	□□□□□ -0.19
NR1H3-223	ENST00000486991	RAPGEF1	Q13905	1077 aa		13.89	□□□□□ -0.19
NR1H3-223	ENST00000486991	CCDC142	Q17RM4	750 aa		13.89	□□□□□ -0.19
NR1H3-223	ENST00000486991	ZNF528	Q3MIS6	628 aa		13.89	□□□□□ -0.19
NR1H3-223	ENST00000486991	OSTM1	Q86WC4	334 aa		13.89	□□□□□ -0.19
NR1H3-223	ENST00000486991	TMC8	Q8IU68	726 aa		13.89	□□□□□ -0.19
NR1H3-223	ENST00000486991	ZNF687	Q8N1G0	1237 aa		13.89	□□□□□ -0.19
NR1H3-223	ENST00000486991	CPLX3	Q8WVH0	158 aa		13.89	□□□□□ -0.19
NR1H3-223	ENST00000486991	ELSPBP1	Q96BH3	223 aa		13.89	□□□□□ -0.19
NR1H3-223	ENST00000486991	ARID3A	Q99856	593 aa		13.89	□□□□□ -0.19
NR1H3-223	ENST00000486991	NUP58	Q9BVL2	599 aa		13.89	□□□□□ -0.19
NR1H3-223	ENST00000486991	OSBPL6	Q9BZF3	934 aa		13.89	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms