RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 SMYD3Q9H7B4 428 aa20.05■□□□□ 0.8
CCDC88B-206ENST00000473405 VRTNQ9H8Y1 702 aa20.05■□□□□ 0.8
CCDC88B-206ENST00000473405 LRRIQ3A6PVS8 624 aaPredicted RBP20.04■□□□□ 0.8
CCDC88B-206ENST00000473405 F8VP50 259 aa20.04■□□□□ 0.8
CCDC88B-206ENST00000473405 TRDMT1O14717 391 aaKnown RBP20.04■□□□□ 0.8
CCDC88B-206ENST00000473405 TRIM66O15016 1216 aa20.04■□□□□ 0.8
CCDC88B-206ENST00000473405 PTPN1P18031 435 aaKnown RBP20.04■□□□□ 0.8
CCDC88B-206ENST00000473405 TGM1P22735 817 aa20.04■□□□□ 0.8
CCDC88B-206ENST00000473405 ATICP31939 592 aa20.04■□□□□ 0.8
CCDC88B-206ENST00000473405 NOP14P78316 857 aaKnown RBP20.04■□□□□ 0.8
CCDC88B-206ENST00000473405 ZXDBP98169 803 aa20.04■□□□□ 0.8
CCDC88B-206ENST00000473405 TRPC3Q13507 836 aa20.04■□□□□ 0.8
CCDC88B-206ENST00000473405 SLC9A9Q8IVB4 645 aa20.04■□□□□ 0.8
CCDC88B-206ENST00000473405 FSIP1Q8NA03 581 aa20.04■□□□□ 0.8
CCDC88B-206ENST00000473405 OSCP1Q8WVF1 389 aa20.04■□□□□ 0.8
CCDC88B-206ENST00000473405 SYAP1Q96A49 352 aaPredicted RBP20.04■□□□□ 0.8
CCDC88B-206ENST00000473405 C8orf48Q96LL4 319 aa20.04■□□□□ 0.8
CCDC88B-206ENST00000473405 ZNF518BQ9C0D4 1074 aa20.04■□□□□ 0.8
CCDC88B-206ENST00000473405 FBRSL1Q9HCM7 1045 aaKnown RBP20.04■□□□□ 0.8
CCDC88B-206ENST00000473405 NXF1Q9UBU9 619 aaKnown RBP20.04■□□□□ 0.8
CCDC88B-206ENST00000473405 WNT6Q9Y6F9 365 aa20.04■□□□□ 0.8
CCDC88B-206ENST00000473405 VNN1O95497 513 aa20.03■□□□□ 0.8
CCDC88B-206ENST00000473405 TCF3P15923 654 aa20.03■□□□□ 0.8
CCDC88B-206ENST00000473405 ANXA13P27216 316 aa20.03■□□□□ 0.8
CCDC88B-206ENST00000473405 HOXA6P31267 233 aa20.03■□□□□ 0.8
CCDC88B-206ENST00000473405 GJA4P35212 333 aa20.03■□□□□ 0.8
CCDC88B-206ENST00000473405 PSMD2Q13200 908 aa20.03■□□□□ 0.8
CCDC88B-206ENST00000473405 SRSF5Q13243 272 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-206ENST00000473405 KCNB1Q14721 858 aa20.03■□□□□ 0.8
CCDC88B-206ENST00000473405 LPAL2Q16609 132 aa20.03■□□□□ 0.8
CCDC88B-206ENST00000473405 EML3Q32P44 896 aa20.03■□□□□ 0.8
CCDC88B-206ENST00000473405 B3GALNT2Q8NCR0 500 aa20.03■□□□□ 0.8
CCDC88B-206ENST00000473405 TTC16Q8NEE8 873 aa20.03■□□□□ 0.8
CCDC88B-206ENST00000473405 SH3RF2Q8TEC5 729 aa20.03■□□□□ 0.8
CCDC88B-206ENST00000473405 ELMO3Q96BJ8 720 aa20.03■□□□□ 0.8
CCDC88B-206ENST00000473405 ELOVL4Q9GZR5 314 aa20.03■□□□□ 0.8
CCDC88B-206ENST00000473405 ECT2Q9H8V3 914 aa20.03■□□□□ 0.8
CCDC88B-206ENST00000473405 PARD6AQ9NPB6 346 aa20.03■□□□□ 0.8
CCDC88B-206ENST00000473405 DUS2Q9NX74 493 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-206ENST00000473405 USP25Q9UHP3 1055 aa20.03■□□□□ 0.8
CCDC88B-206ENST00000473405 ARHGAP26Q9UNA1 814 aa20.03■□□□□ 0.8
CCDC88B-206ENST00000473405 RALGAPA1Q6GYQ0 2036 aa20.03■□□□□ 0.8
CCDC88B-206ENST00000473405 FAM237AA0A1B0GTK4 181 aa20.02■□□□□ 0.8
CCDC88B-206ENST00000473405 HRO43593 1189 aa20.02■□□□□ 0.8
CCDC88B-206ENST00000473405 PHACTR2O75167 634 aa20.02■□□□□ 0.8
CCDC88B-206ENST00000473405 EGFP01133 1207 aa20.02■□□□□ 0.8
CCDC88B-206ENST00000473405 C4BPAP04003 597 aaKnown RBP20.02■□□□□ 0.8
CCDC88B-206ENST00000473405 HDCP19113 662 aa20.02■□□□□ 0.8
CCDC88B-206ENST00000473405 DLG4P78352 724 aa20.02■□□□□ 0.8
CCDC88B-206ENST00000473405 GRSF1Q12849 480 aaKnown RBP eCLIP20.02■□□□□ 0.8
CCDC88B-206ENST00000473405 BIRC3Q13489 604 aa20.02■□□□□ 0.8
CCDC88B-206ENST00000473405 NCOA4Q13772 614 aa20.02■□□□□ 0.8
CCDC88B-206ENST00000473405 ZNF699Q32M78 642 aa20.02■□□□□ 0.8
CCDC88B-206ENST00000473405 HEATR6Q6AI08 1181 aaKnown RBP20.02■□□□□ 0.8
CCDC88B-206ENST00000473405 LAIR1Q6GTX8 287 aa20.02■□□□□ 0.8
CCDC88B-206ENST00000473405 LONP2Q86WA8 852 aa20.02■□□□□ 0.8
CCDC88B-206ENST00000473405 CPA6Q8N4T0 437 aa20.02■□□□□ 0.8
CCDC88B-206ENST00000473405 SECISBP2LQ93073 1101 aaKnown RBP20.02■□□□□ 0.8
CCDC88B-206ENST00000473405 ATP2A3Q93084 1043 aa20.02■□□□□ 0.8
CCDC88B-206ENST00000473405 SPATA32Q96LK8 384 aa20.02■□□□□ 0.8
CCDC88B-206ENST00000473405 B3GNT5Q9BYG0 378 aa20.02■□□□□ 0.8
CCDC88B-206ENST00000473405 DLL3Q9NYJ7 618 aa20.02■□□□□ 0.8
CCDC88B-206ENST00000473405 MYH10P35580 1976 aa20.02■□□□□ 0.8
CCDC88B-206ENST00000473405 ZNF840PA6NDX5 716 aa20.01■□□□□ 0.79
CCDC88B-206ENST00000473405 A8MXQ7 604 aa20.01■□□□□ 0.79
CCDC88B-206ENST00000473405 CLDN5O00501 218 aa20.01■□□□□ 0.79
CCDC88B-206ENST00000473405 PDXKO00764 312 aa20.01■□□□□ 0.79
CCDC88B-206ENST00000473405 OLFM2O95897 454 aa20.01■□□□□ 0.79
CCDC88B-206ENST00000473405 NR3C1P04150 777 aa20.01■□□□□ 0.79
CCDC88B-206ENST00000473405 MYL1P05976 194 aa20.01■□□□□ 0.79
CCDC88B-206ENST00000473405 PRR29P0C7W0 189 aa20.01■□□□□ 0.79
CCDC88B-206ENST00000473405 RAP1GAPP47736 663 aa20.01■□□□□ 0.79
CCDC88B-206ENST00000473405 NDUFA8P51970 172 aa20.01■□□□□ 0.79
CCDC88B-206ENST00000473405 AP3M2P53677 418 aa20.01■□□□□ 0.79
CCDC88B-206ENST00000473405 CDH8P55286 799 aa20.01■□□□□ 0.79
CCDC88B-206ENST00000473405 KRT85P78386 507 aa20.01■□□□□ 0.79
CCDC88B-206ENST00000473405 SCARA5Q6ZMJ2 495 aa20.01■□□□□ 0.79
CCDC88B-206ENST00000473405 EZH1Q92800 747 aaPredicted RBP20.01■□□□□ 0.79
CCDC88B-206ENST00000473405 SDCBP2Q9H190 292 aa20.01■□□□□ 0.79
CCDC88B-206ENST00000473405 TRPM5Q9NZQ8 1165 aa20.01■□□□□ 0.79
CCDC88B-206ENST00000473405 GTF3C3Q9Y5Q9 886 aa20.01■□□□□ 0.79
CCDC88B-206ENST00000473405 RNF40O75150 1001 aa20■□□□□ 0.79
CCDC88B-206ENST00000473405 RPN1P04843 607 aaKnown RBP20■□□□□ 0.79
CCDC88B-206ENST00000473405 PFKLP17858 780 aa20■□□□□ 0.79
CCDC88B-206ENST00000473405 IFNAR2P48551 515 aa20■□□□□ 0.79
CCDC88B-206ENST00000473405 PDE6CP51160 858 aa20■□□□□ 0.79
CCDC88B-206ENST00000473405 GALK1P51570 392 aa20■□□□□ 0.79
CCDC88B-206ENST00000473405 ZACNQ401N2 412 aa20■□□□□ 0.79
CCDC88B-206ENST00000473405 C1orf220Q5T0J3 134 aa20■□□□□ 0.79
CCDC88B-206ENST00000473405 PRR23BQ6ZRT6 265 aa20■□□□□ 0.79
CCDC88B-206ENST00000473405 WDR5BQ86VZ2 330 aa20■□□□□ 0.79
CCDC88B-206ENST00000473405 GPR161Q8N6U8 529 aaKnown RBP20■□□□□ 0.79
CCDC88B-206ENST00000473405 P2RY13Q9BPV8 354 aa20■□□□□ 0.79
CCDC88B-206ENST00000473405 RNF38Q9H0F5 515 aa20■□□□□ 0.79
CCDC88B-206ENST00000473405 EHD2Q9NZN4 543 aa20■□□□□ 0.79
CCDC88B-206ENST00000473405 GMEB2Q9UKD1 530 aa20■□□□□ 0.79
CCDC88B-206ENST00000473405 RAB23Q9ULC3 237 aa20■□□□□ 0.79
CCDC88B-206ENST00000473405 OAS1P00973 400 aaKnown RBP19.99■□□□□ 0.79
CCDC88B-206ENST00000473405 CNR2P34972 360 aa19.99■□□□□ 0.79
CCDC88B-206ENST00000473405 SYKP43405 635 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms