RNA–Protein interactions for RNA: ENST00000467182.1

COL4A1-202, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 3

Gene COL4A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-202ENST00000467182 PTPROQ16827 1216 aa13.7□□□□□ -0.22
COL4A1-202ENST00000467182 CTXN3Q4LDR2 81 aa13.7□□□□□ -0.22
COL4A1-202ENST00000467182 SLC39A12Q504Y0 691 aa13.7□□□□□ -0.22
COL4A1-202ENST00000467182 RAB41Q5JT25 222 aa13.7□□□□□ -0.22
COL4A1-202ENST00000467182 ZNF280DQ6N043 979 aa13.7□□□□□ -0.22
COL4A1-202ENST00000467182 TRNP1Q6NT89 227 aa13.7□□□□□ -0.22
COL4A1-202ENST00000467182 PRSS55Q6UWB4 352 aaPredicted RBP13.7□□□□□ -0.22
COL4A1-202ENST00000467182 SYCE1Q8N0S2 351 aa13.7□□□□□ -0.22
COL4A1-202ENST00000467182 IPO4Q8TEX9 1081 aaKnown RBP13.7□□□□□ -0.22
COL4A1-202ENST00000467182 CLEC4CQ8WTT0 213 aa13.7□□□□□ -0.22
COL4A1-202ENST00000467182 CLP1Q92989 425 aaKnown RBP13.7□□□□□ -0.22
COL4A1-202ENST00000467182 SMARCD1Q96GM5 515 aa13.7□□□□□ -0.22
COL4A1-202ENST00000467182 HES6Q96HZ4 224 aa13.7□□□□□ -0.22
COL4A1-202ENST00000467182 KCNK16Q96T55 309 aa13.7□□□□□ -0.22
COL4A1-202ENST00000467182 TTPALQ9BTX7 342 aa13.7□□□□□ -0.22
COL4A1-202ENST00000467182 ST7Q9NRC1 585 aa13.7□□□□□ -0.22
COL4A1-202ENST00000467182 TMEM59LQ9UK28 342 aa13.7□□□□□ -0.22
COL4A1-202ENST00000467182 SNX12Q9UMY4 172 aa13.7□□□□□ -0.22
COL4A1-202ENST00000467182 HYOU1Q9Y4L1 999 aa13.7□□□□□ -0.22
COL4A1-202ENST00000467182 LCHNA4D1U4 455 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 TMEM110-MUSTN1A8MSY1 372 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 H7C4K7 107 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 URI1O94763 535 aaPredicted RBP13.69□□□□□ -0.22
COL4A1-202ENST00000467182 PROSCO94903 275 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 PRLRP16471 622 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 COMTP21964 271 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 BDNFP23560 247 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 RFC1P35251 1148 aaPredicted RBP13.69□□□□□ -0.22
COL4A1-202ENST00000467182 SCNN1AP37088 669 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 ACADSBP45954 432 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 SLC6A3Q01959 620 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 TAP1Q03518 808 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 USP41Q3LFD5 358 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 CFAP221Q4G0U5 840 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 SPOUT1Q5T280 376 aaKnown RBP13.69□□□□□ -0.22
COL4A1-202ENST00000467182 OR6B2Q6IFH4 312 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 ANKS3Q6ZW76 656 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 GPRIN1Q7Z2K8 1008 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 DDX53Q86TM3 631 aaKnown RBP13.69□□□□□ -0.22
COL4A1-202ENST00000467182 ZDHHC17Q8IUH5 632 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 DCP1BQ8IZD4 617 aaKnown RBP13.69□□□□□ -0.22
COL4A1-202ENST00000467182 PIK3R5Q8WYR1 880 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 DPF3Q92784 378 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 MCEEQ96PE7 176 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 RAD9AQ99638 391 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 SELENOOQ9BVL4 669 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 MIS12Q9H081 205 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 SYNCQ9H7C4 482 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 METTL5Q9NRN9 209 aaKnown RBP13.69□□□□□ -0.22
COL4A1-202ENST00000467182 SPG21Q9NZD8 308 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 MTRRQ9UBK8 725 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 INSL6Q9Y581 213 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 BACE2Q9Y5Z0 518 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 MRFAP1Q9Y605 127 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 SLC4A7Q9Y6M7 1214 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 GBF1Q92538 1859 aa13.69□□□□□ -0.22
COL4A1-202ENST00000467182 CARNS1A5YM72 827 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 CCDC85CA6NKD9 419 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 ADAM12O43184 909 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 SRGAP2O75044 1071 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 KRT3P12035 628 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 LCP1P13796 627 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 ATP2A2P16615 1042 aaKnown RBP13.68□□□□□ -0.22
COL4A1-202ENST00000467182 CYP2F1P24903 491 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 NDUFV1P49821 464 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 DSG1Q02413 1049 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 GPR17Q13304 367 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 TAF5Q15542 800 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 C9orf50Q5SZB4 431 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 FAM102AQ5T9C2 384 aaPredicted RBP13.68□□□□□ -0.22
COL4A1-202ENST00000467182 SLC8B1Q6J4K2 584 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 C4orf50Q6ZRC1 276 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 BHLHA9Q7RTU4 235 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 PEX26Q7Z412 305 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 SCUBE3Q8IX30 993 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 FIBCD1Q8N539 461 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 NIPA2Q8N8Q9 360 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 FNIP1Q8TF40 1166 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 FUBP3Q96I24 572 aaKnown RBP eCLIP13.68□□□□□ -0.22
COL4A1-202ENST00000467182 OSBPL9Q96SU4 736 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 OXCT2Q9BYC2 517 aaPredicted RBP13.68□□□□□ -0.22
COL4A1-202ENST00000467182 CDC23Q9UJX2 597 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 AMFRQ9UKV5 643 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 SAR1BQ9Y6B6 198 aa13.68□□□□□ -0.22
COL4A1-202ENST00000467182 MTMR11A4FU01 709 aa13.67□□□□□ -0.22
COL4A1-202ENST00000467182 C2CD4BA6NLJ0 364 aa13.67□□□□□ -0.22
COL4A1-202ENST00000467182 MYO1FO00160 1098 aa13.67□□□□□ -0.22
COL4A1-202ENST00000467182 RIOK3O14730 519 aaKnown RBP13.67□□□□□ -0.22
COL4A1-202ENST00000467182 TNFRSF10BO14763 440 aa13.67□□□□□ -0.22
COL4A1-202ENST00000467182 CTNNA2P26232 953 aa13.67□□□□□ -0.22
COL4A1-202ENST00000467182 MAN1A1P33908 653 aa13.67□□□□□ -0.22
COL4A1-202ENST00000467182 FLT3P36888 993 aa13.67□□□□□ -0.22
COL4A1-202ENST00000467182 SLC1A1P43005 524 aa13.67□□□□□ -0.22
COL4A1-202ENST00000467182 PEX5P50542 639 aa13.67□□□□□ -0.22
COL4A1-202ENST00000467182 TKTL1P51854 596 aa13.67□□□□□ -0.22
COL4A1-202ENST00000467182 SNX16P57768 344 aa13.67□□□□□ -0.22
COL4A1-202ENST00000467182 ADIGQ0VDE8 80 aa13.67□□□□□ -0.22
COL4A1-202ENST00000467182 RPS6KA1Q15418 735 aa13.67□□□□□ -0.22
COL4A1-202ENST00000467182 PSMD5Q16401 504 aa13.67□□□□□ -0.22
COL4A1-202ENST00000467182 NFE2Q16621 373 aaPredicted RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms