RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 CYB5D1Q6P9G0 228 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 NPNTQ6UXI9 565 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 PPP1R21Q6ZMI0 780 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 SPATA21Q7Z572 469 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 TDRPQ86YL5 185 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 PPIL6Q8IXY8 311 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 NAT8LQ8N9F0 302 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 TTC13Q8NBP0 860 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 WDR83Q9BRX9 315 aaKnown RBP9.37□□□□□ -0.91
SYNE1-217ENST00000466159 TRABDQ9H4I3 376 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 VRTNQ9H8Y1 702 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 CYP3A43Q9HB55 503 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 DPP3Q9NY33 737 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 BARX2Q9UMQ3 279 aaPredicted RBP9.37□□□□□ -0.91
SYNE1-217ENST00000466159 SCN1AP35498 2009 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.37□□□□□ -0.91
SYNE1-217ENST00000466159 E5RJQ4 531 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 MAGEB2O15479 319 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 TSPAN1O60635 241 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 TMEM63AO94886 807 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 SUN1O94901 812 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 UBOX5O94941 541 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 HMGCRP04035 888 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 RBP3P10745 1247 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 P4HA1P13674 534 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 ADORA2AP29274 412 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 MNAT1P51948 309 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 EIF3EP60228 445 aaKnown RBP9.37□□□□□ -0.91
SYNE1-217ENST00000466159 CDO1Q16878 200 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 OR6B2Q6IFH4 312 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 MTHFD1LQ6UB35 978 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 FAM47EQ6ZV65 393 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 PCGF5Q86SE9 256 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 IFNLR1Q8IU57 520 aaPredicted RBP9.37□□□□□ -0.91
SYNE1-217ENST00000466159 SPATA18Q8TC71 538 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 FAXDC2Q96IV6 333 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 ACAP3Q96P50 834 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 C16orf70Q9BSU1 422 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.37□□□□□ -0.91
SYNE1-217ENST00000466159 TSPAN16Q9UKR8 245 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 ZSWIM8A7E2V4 1837 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 C2CD4BA6NLJ0 364 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 APOC4-APOC2K7ER74 178 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 HGSO14964 777 aaPredicted RBP9.36□□□□□ -0.91
SYNE1-217ENST00000466159 ASMTLO95671 621 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 APOC2P02655 101 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 PFKMP08237 780 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 PDGFRAP16234 1089 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 RPA3P35244 121 aaPredicted RBP9.36□□□□□ -0.91
SYNE1-217ENST00000466159 RGS7P49802 495 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 ZNF143P52747 638 aaPredicted RBP9.36□□□□□ -0.91
SYNE1-217ENST00000466159 CDH6P55285 790 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 NR1H3Q13133 447 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 ZNF792Q3KQV3 632 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 SYCP2LQ5T4T6 812 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 FAM183BPQ6ZVS7 135 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 CYP4V2Q6ZWL3 525 aaPredicted RBP9.36□□□□□ -0.91
SYNE1-217ENST00000466159 ZC3H18Q86VM9 953 aaKnown RBP9.36□□□□□ -0.91
SYNE1-217ENST00000466159 PPTC7Q8NI37 304 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 DENND1AQ8TEH3 1009 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 PYROXD1Q8WU10 500 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 RXFP2Q8WXD0 754 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 SPOCK2Q92563 424 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 SGSM3Q96HU1 749 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 UBN1Q9NPG3 1134 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 ASNSD1Q9NWL6 643 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 RABGEF1Q9UJ41 708 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 GRID1Q9ULK0 1009 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 KAT6AQ92794 2004 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 PLXNA1Q9UIW2 1896 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 A0A1B0GUA9 196 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 H3BRB1 525 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 GPD1P21695 349 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 ARL4CP56559 192 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 BASP1P80723 227 aaKnown RBP9.36□□□□□ -0.91
SYNE1-217ENST00000466159 RBP5P82980 135 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 ATP11AP98196 1134 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 IL9RQ01113 521 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 INCA1Q0VD86 236 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 ACAP1Q15027 740 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 C3orf62Q6ZUJ4 267 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 FBXO36Q8NEA4 188 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 SHCBP1Q8NEM2 672 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 PPP1R13LQ8WUF5 828 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 KIF12Q96FN5 646 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 RMDN2Q96LZ7 410 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 SMC6Q96SB8 1091 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 MAK16Q9BXY0 300 aaKnown RBP9.36□□□□□ -0.91
SYNE1-217ENST00000466159 FRMD8P1Q9BZ68 369 aaPredicted RBP9.36□□□□□ -0.91
SYNE1-217ENST00000466159 PITPNM3Q9BZ71 974 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 TUT1Q9H6E5 874 aaKnown RBP9.36□□□□□ -0.91
SYNE1-217ENST00000466159 RNF19AQ9NV58 838 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 PRKAG3Q9UGI9 489 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 ITGA11Q9UKX5 1188 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 GINS2Q9Y248 185 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 ARL2BPQ9Y2Y0 163 aa9.36□□□□□ -0.91
SYNE1-217ENST00000466159 PPEF2O14830 753 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 MCF2LO15068 1137 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 PRPF4O43172 522 aaKnown RBP eCLIP9.35□□□□□ -0.91
SYNE1-217ENST00000466159 GSTA1P08263 222 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 134.2 ms