RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 ZNHIT6Q9NWK9 470 aaKnown RBP19.21■□□□□ 0.67
HMGA1-201ENST00000311487 TAS2R14Q9NYV8 317 aa19.21■□□□□ 0.67
HMGA1-201ENST00000311487 ADAMTS1Q9UHI8 967 aa19.21■□□□□ 0.67
HMGA1-201ENST00000311487 FBXW11Q9UKB1 542 aa19.21■□□□□ 0.67
HMGA1-201ENST00000311487 KIAA1257Q9ULG3 409 aa19.21■□□□□ 0.67
HMGA1-201ENST00000311487 MAGED2Q9UNF1 606 aaPredicted RBP19.21■□□□□ 0.67
HMGA1-201ENST00000311487 DAAM1Q9Y4D1 1078 aa19.21■□□□□ 0.67
HMGA1-201ENST00000311487 MED7O43513 233 aa19.21■□□□□ 0.67
HMGA1-201ENST00000311487 GLP2RO95838 553 aa19.21■□□□□ 0.67
HMGA1-201ENST00000311487 HAPLN1P10915 354 aaPredicted RBP19.21■□□□□ 0.67
HMGA1-201ENST00000311487 NPR3P17342 541 aa19.21■□□□□ 0.67
HMGA1-201ENST00000311487 CFAP221Q4G0U5 840 aa19.21■□□□□ 0.67
HMGA1-201ENST00000311487 TPGS2Q68CL5 300 aa19.21■□□□□ 0.67
HMGA1-201ENST00000311487 GPR65Q8IYL9 337 aa19.21■□□□□ 0.67
HMGA1-201ENST00000311487 OLIG1Q8TAK6 271 aa19.21■□□□□ 0.67
HMGA1-201ENST00000311487 SPPL2BQ8TCT7 592 aa19.21■□□□□ 0.67
HMGA1-201ENST00000311487 YIPF1Q9Y548 306 aa19.21■□□□□ 0.67
HMGA1-201ENST00000311487 SERPING1P05155 500 aa19.2■□□□□ 0.66
HMGA1-201ENST00000311487 FOSL2P15408 326 aa19.2■□□□□ 0.66
HMGA1-201ENST00000311487 TNFAIP3P21580 790 aa19.2■□□□□ 0.66
HMGA1-201ENST00000311487 TERF1P54274 439 aa19.2■□□□□ 0.66
HMGA1-201ENST00000311487 MTF1Q14872 753 aa19.2■□□□□ 0.66
HMGA1-201ENST00000311487 CLUL1Q15846 466 aa19.2■□□□□ 0.66
HMGA1-201ENST00000311487 NAA35Q5VZE5 725 aa19.2■□□□□ 0.66
HMGA1-201ENST00000311487 SYN2Q92777 582 aaPredicted RBP19.2■□□□□ 0.66
HMGA1-201ENST00000311487 DNAI2Q9GZS0 605 aa19.2■□□□□ 0.66
HMGA1-201ENST00000311487 NUCKS1Q9H1E3 243 aaKnown RBP19.2■□□□□ 0.66
HMGA1-201ENST00000311487 MTMR10Q9NXD2 777 aa19.2■□□□□ 0.66
HMGA1-201ENST00000311487 CLDND1Q9NY35 253 aa19.2■□□□□ 0.66
HMGA1-201ENST00000311487 INSL5Q9Y5Q6 135 aa19.2■□□□□ 0.66
HMGA1-201ENST00000311487 SOWAHDA6NJG2 315 aa19.19■□□□□ 0.66
HMGA1-201ENST00000311487 CCDC172P0C7W6 258 aa19.19■□□□□ 0.66
HMGA1-201ENST00000311487 LCP1P13796 627 aa19.19■□□□□ 0.66
HMGA1-201ENST00000311487 GPD2P43304 727 aa19.19■□□□□ 0.66
HMGA1-201ENST00000311487 USP46P62068 366 aa19.19■□□□□ 0.66
HMGA1-201ENST00000311487 GFPT1Q06210 699 aaPredicted RBP19.19■□□□□ 0.66
HMGA1-201ENST00000311487 SKIV2LQ15477 1246 aaKnown RBP19.19■□□□□ 0.66
HMGA1-201ENST00000311487 PKDCCQ504Y2 493 aa19.19■□□□□ 0.66
HMGA1-201ENST00000311487 LIN9Q5TKA1 542 aa19.19■□□□□ 0.66
HMGA1-201ENST00000311487 TMC5Q6UXY8 1006 aa19.19■□□□□ 0.66
HMGA1-201ENST00000311487 PIGZQ86VD9 579 aa19.19■□□□□ 0.66
HMGA1-201ENST00000311487 TCEAL8Q8IYN2 117 aa19.19■□□□□ 0.66
HMGA1-201ENST00000311487 NHEJ1Q9H9Q4 299 aaPredicted RBP19.19■□□□□ 0.66
HMGA1-201ENST00000311487 HCFC1R1Q9NWW0 138 aa19.19■□□□□ 0.66
HMGA1-201ENST00000311487 CHORDC1Q9UHD1 332 aaPredicted RBP19.19■□□□□ 0.66
HMGA1-201ENST00000311487 DOCK6Q96HP0 2047 aa19.19■□□□□ 0.66
HMGA1-201ENST00000311487 BRWD1Q9NSI6 2320 aa19.19■□□□□ 0.66
HMGA1-201ENST00000311487 DDX3XO00571 662 aaKnown RBP eCLIP19.19■□□□□ 0.666e-37■■■□□ 18.5
HMGA1-201ENST00000311487 GABBR2O75899 941 aa19.19■□□□□ 0.66
HMGA1-201ENST00000311487 BST2Q10589 180 aaKnown RBP19.19■□□□□ 0.66
HMGA1-201ENST00000311487 FUBP3Q96I24 572 aaKnown RBP eCLIP19.19■□□□□ 0.66
HMGA1-201ENST00000311487 SYT11Q9BT88 431 aa19.19■□□□□ 0.66
HMGA1-201ENST00000311487 DMAP1Q9NPF5 467 aaPredicted RBP19.19■□□□□ 0.66
HMGA1-201ENST00000311487 KCND1Q9NSA2 647 aa19.19■□□□□ 0.66
HMGA1-201ENST00000311487 PTPRDP23468 1912 aa19.18■□□□□ 0.66
HMGA1-201ENST00000311487 A0A087X0T9 212 aa19.18■□□□□ 0.66
HMGA1-201ENST00000311487 FAM228BP0C875 321 aa19.18■□□□□ 0.66
HMGA1-201ENST00000311487 HNRNPH3P31942 346 aaKnown RBP19.18■□□□□ 0.66
HMGA1-201ENST00000311487 PRKCIP41743 596 aa19.18■□□□□ 0.66
HMGA1-201ENST00000311487 ALDH1A3P47895 512 aa19.18■□□□□ 0.66
HMGA1-201ENST00000311487 BCAT1P54687 386 aa19.18■□□□□ 0.66
HMGA1-201ENST00000311487 PPM1LQ5SGD2 360 aa19.18■□□□□ 0.66
HMGA1-201ENST00000311487 CYP4A22Q5TCH4 519 aa19.18■□□□□ 0.66
HMGA1-201ENST00000311487 SLC35F5Q8WV83 523 aa19.18■□□□□ 0.66
HMGA1-201ENST00000311487 PPP2R3CQ969Q6 453 aa19.18■□□□□ 0.66
HMGA1-201ENST00000311487 MIS12Q9H081 205 aa19.18■□□□□ 0.66
HMGA1-201ENST00000311487 DEF6Q9H4E7 631 aa19.18■□□□□ 0.66
HMGA1-201ENST00000311487 CCDC195A0A1B0GUA6 201 aa19.17■□□□□ 0.66
HMGA1-201ENST00000311487 USP27XA6NNY8 438 aa19.17■□□□□ 0.66
HMGA1-201ENST00000311487 ANXA13P27216 316 aa19.17■□□□□ 0.66
HMGA1-201ENST00000311487 TUFMP49411 452 aaKnown RBP19.17■□□□□ 0.66
HMGA1-201ENST00000311487 KCNC3Q14003 757 aa19.17■□□□□ 0.66
HMGA1-201ENST00000311487 MEA1Q16626 185 aa19.17■□□□□ 0.66
HMGA1-201ENST00000311487 SCUBE3Q8IX30 993 aa19.17■□□□□ 0.66
HMGA1-201ENST00000311487 CLEC4CQ8WTT0 213 aa19.17■□□□□ 0.66
HMGA1-201ENST00000311487 C2orf15Q8WU43 125 aaKnown RBP19.17■□□□□ 0.66
HMGA1-201ENST00000311487 PANX2Q96RD6 677 aa19.17■□□□□ 0.66
HMGA1-201ENST00000311487 CPXM1Q96SM3 734 aa19.17■□□□□ 0.66
HMGA1-201ENST00000311487 PCDHGC3Q9UN70 934 aa19.17■□□□□ 0.66
HMGA1-201ENST00000311487 ATP8B3O60423 1300 aa19.17■□□□□ 0.66
HMGA1-201ENST00000311487 HHLA1C9JL84 531 aa19.17■□□□□ 0.66
HMGA1-201ENST00000311487 LRG1P02750 347 aa19.17■□□□□ 0.66
HMGA1-201ENST00000311487 SLC5A3P53794 718 aa19.17■□□□□ 0.66
HMGA1-201ENST00000311487 SMARCB1Q12824 385 aa19.17■□□□□ 0.66
HMGA1-201ENST00000311487 RARS2Q5T160 578 aaKnown RBP19.17■□□□□ 0.66
HMGA1-201ENST00000311487 HS6ST3Q8IZP7 471 aa19.17■□□□□ 0.66
HMGA1-201ENST00000311487 BAG1Q99933 345 aaPredicted RBP19.17■□□□□ 0.66
HMGA1-201ENST00000311487 CSNK1G1Q9HCP0 422 aa19.17■□□□□ 0.66
HMGA1-201ENST00000311487 ABCB6Q9NP58 842 aa19.17■□□□□ 0.66
HMGA1-201ENST00000311487 LMCD1Q9NZU5 365 aa19.17■□□□□ 0.66
HMGA1-201ENST00000311487 NRG2O14511 850 aaPredicted RBP19.16■□□□□ 0.66
HMGA1-201ENST00000311487 TBX10O75333 385 aa19.16■□□□□ 0.66
HMGA1-201ENST00000311487 PGFP49763 221 aa19.16■□□□□ 0.66
HMGA1-201ENST00000311487 SLC8A3P57103 927 aa19.16■□□□□ 0.66
HMGA1-201ENST00000311487 NTHL1P78549 312 aa19.16■□□□□ 0.66
HMGA1-201ENST00000311487 ADIGQ0VDE8 80 aa19.16■□□□□ 0.66
HMGA1-201ENST00000311487 VSTM1Q6UX27 236 aa19.16■□□□□ 0.66
HMGA1-201ENST00000311487 TMEM139Q8IV31 216 aa19.16■□□□□ 0.66
HMGA1-201ENST00000311487 EFHBQ8N7U6 833 aa19.16■□□□□ 0.66
HMGA1-201ENST00000311487 CCDC42Q96M95 316 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms