RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 ENC1O14682 589 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 RECQL5O94762 991 aaPredicted RBP6.29□□□□□ -1.4
VPS13D-201ENST00000011700 POU4F1Q01851 419 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 INTS11Q5TA45 600 aaKnown RBP6.29□□□□□ -1.4
VPS13D-201ENST00000011700 SEL1L3Q68CR1 1132 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 CCNB1IP1Q9NPC3 277 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 RALGAPA1Q6GYQ0 2036 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 METTL21EPA6NDL7 271 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 GUCY1A2P33402 732 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 VPS72Q15906 364 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 SPDYAQ5MJ70 313 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 BTBD8Q5XKL5 378 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 RRAGDQ9NQL2 400 aaPredicted RBP6.29□□□□□ -1.4
VPS13D-201ENST00000011700 ZNF302Q9NR11 478 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 FAM153AQ9UHL3 310 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 RNASEH1O60930 286 aaKnown RBP6.29□□□□□ -1.4
VPS13D-201ENST00000011700 WBP4O75554 376 aaKnown RBP6.29□□□□□ -1.4
VPS13D-201ENST00000011700 ADD1P35611 737 aaKnown RBP6.29□□□□□ -1.4
VPS13D-201ENST00000011700 MAPK8P45983 427 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 CORO7P57737 925 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 FAM98BQ52LJ0 330 aaKnown RBP6.29□□□□□ -1.4
VPS13D-201ENST00000011700 THEMIS2Q5TEJ8 643 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 IYDQ6PHW0 289 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 ADHFE1Q8IWW8 467 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 CRNNQ9UBG3 495 aaPredicted RBP6.29□□□□□ -1.4
VPS13D-201ENST00000011700 PHKG2P15735 406 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 POLR2LP62875 67 aaKnown RBP6.29□□□□□ -1.4
VPS13D-201ENST00000011700 STX4Q12846 297 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 MSLNQ13421 630 aaPredicted RBP6.29□□□□□ -1.4
VPS13D-201ENST00000011700 TUBA3CQ13748 450 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 RCN1Q15293 331 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 TCEAL5Q5H9L2 206 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 MZT2AQ6P582 158 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 JARID2Q92833 1246 aaPredicted RBP6.29□□□□□ -1.4
VPS13D-201ENST00000011700 TBCBQ99426 244 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 CXorf56Q9H5V9 222 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 SHOC2Q9UQ13 582 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 KLHL20Q9Y2M5 609 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 IPPQ9Y573 584 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 TNPO3Q9Y5L0 923 aaKnown RBP6.29□□□□□ -1.4
VPS13D-201ENST00000011700 ACTL7BQ9Y614 415 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 EYA4O95677 639 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 AKT1P31749 480 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 RFTN2Q52LD8 501 aaPredicted RBP6.29□□□□□ -1.4
VPS13D-201ENST00000011700 SH3BP5LQ7L8J4 393 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 DENND6AQ8IWF6 608 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 CCNYL1Q8N7R7 359 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 VAT1Q99536 393 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 OSBPL10Q9BXB5 764 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 BBS2Q9BXC9 721 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 NT5C1AQ9BXI3 368 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 CLIC4Q9Y696 253 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 NWD1Q149M9 1564 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 CYTH3O43739 400 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 BCL10O95999 233 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 FCER1AP12319 257 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 EIF3EP60228 445 aaKnown RBP6.29□□□□□ -1.4
VPS13D-201ENST00000011700 DYNLT1P63172 113 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 TMEM132BQ14DG7 1078 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 RBM20Q5T481 1227 aaKnown RBP6.29□□□□□ -1.4
VPS13D-201ENST00000011700 C12orf60Q5U649 245 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 C11orf63Q6NUN7 778 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 USP17L2Q6R6M4 530 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 KRT77Q7Z794 578 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 MCRS1Q96EZ8 462 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 ERGIC2Q96RQ1 377 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 NXF1Q9UBU9 619 aaKnown RBP6.29□□□□□ -1.4
VPS13D-201ENST00000011700 SLC25A13Q9UJS0 675 aa6.29□□□□□ -1.4
VPS13D-201ENST00000011700 RIMBP2O15034 1052 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 ABL2P42684 1182 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 POU5F1BQ06416 359 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 SHROOM1Q2M3G4 852 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 NANOGNBQ7Z5D8 188 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 PPM1NQ8N819 430 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 ACTRT1Q8TDG2 376 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 C6orf203Q9P0P8 240 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 PRR12Q9ULL5 1215 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 ADGRG1Q9Y653 693 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 USP42Q9H9J4 1324 aaKnown RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 SCN2AQ99250 2005 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 ABCA1O95477 2261 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 PLK4O00444 970 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 RARBP10826 455 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 PAICSP22234 425 aaKnown RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 GTF2IP78347 998 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 WASHC2DQ5SRD0 308 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 ARHGAP17Q68EM7 881 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 MYO1HQ8N1T3 1032 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 OR6B3Q8NGW1 331 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 HELQQ8TDG4 1101 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 BTN2A2Q8WVV5 523 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 XPO7Q9UIA9 1087 aaKnown RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 CHP2O43745 196 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 VCAM1P19320 739 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 HPCAL1P37235 193 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 KRT17Q04695 432 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 PPIDQ08752 370 aaKnown RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 NECTIN1Q15223 517 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 ZNF655Q8N720 491 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 TFB1MQ8WVM0 346 aaKnown RBP6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms