RNA–Protein interactions for RNA: YLR440C

SEC39, Transcript of Component of the Dsl1p tethering complex, yeast

Gene SEC39, Length 2,130 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC39	YLR440C	RPL15B	P54780	204 aa	Predicted RBP	4.07	□□□□□ -1.76
SEC39	YLR440C	HAL1	Q01766	294 aa		4.07	□□□□□ -1.76
SEC39	YLR440C	SYM1	Q06563	197 aa		4.07	□□□□□ -1.76
SEC39	YLR440C	HPA2	Q06592	156 aa		4.07	□□□□□ -1.76
SEC39	YLR440C	YDL242W	Q07746	117 aa		4.07	□□□□□ -1.76
SEC39	YLR440C	YPL038W-A	Q3E7B4	63 aa		4.07	□□□□□ -1.76
SEC39	YLR440C	ODC2	Q99297	307 aa		4.07	□□□□□ -1.76
SEC39	YLR440C	HSP10	P38910	106 aa		4.06	□□□□□ -1.76
SEC39	YLR440C	RRT13	P40042	185 aa		4.06	□□□□□ -1.76
SEC39	YLR440C	TDA2	P40045	126 aa		4.06	□□□□□ -1.76
SEC39	YLR440C	YNL200C	P40165	246 aa	Known RBP	4.06	□□□□□ -1.76
SEC39	YLR440C	YNR064C	P53750	290 aa		4.06	□□□□□ -1.76
SEC39	YLR440C	COX12	Q01519	83 aa		4.06	□□□□□ -1.76
SEC39	YLR440C	NUM1	Q00402	2748 aa		4.06	□□□□□ -1.76
SEC39	YLR440C	SPS100	P13130	326 aa		4.06	□□□□□ -1.76
SEC39	YLR440C	RIM2	P38127	377 aa		4.06	□□□□□ -1.76
SEC39	YLR440C	TES1	P41903	349 aa	Known RBP	4.06	□□□□□ -1.76
SEC39	YLR440C	YJL028W	P47062	111 aa		4.06	□□□□□ -1.76
SEC39	YLR440C	SEN1	Q00416	2231 aa	Known RBP	4.05	□□□□□ -1.76
SEC39	YLR440C	DDR48	P18899	430 aa	Known RBP	4.05	□□□□□ -1.76
SEC39	YLR440C	SIM1	P40472	476 aa		4.05	□□□□□ -1.76
SEC39	YLR440C	LYS5	P50113	272 aa		4.05	□□□□□ -1.76
SEC39	YLR440C	YML100W-A	Q8TGT0	57 aa		4.05	□□□□□ -1.76
SEC39	YLR440C	SAP30	P38429	201 aa		4.04	□□□□□ -1.76
SEC39	YLR440C	YAL064W	P39711	94 aa		4.04	□□□□□ -1.76
SEC39	YLR440C	PGU1	P47180	361 aa		4.04	□□□□□ -1.76
SEC39	YLR440C	TPC1	P53257	314 aa		4.04	□□□□□ -1.76
SEC39	YLR440C	YOR105W	Q08504	108 aa		4.04	□□□□□ -1.76
SEC39	YLR440C	RPS8A	P0CX39	200 aa	Known RBP	4.04	□□□□□ -1.76
SEC39	YLR440C	RPS8B	P0CX40	200 aa	Known RBP	4.04	□□□□□ -1.76
SEC39	YLR440C	AHP1	P38013	176 aa	Known RBP	4.04	□□□□□ -1.76
SEC39	YLR440C	YNL217W	P40152	326 aa		4.04	□□□□□ -1.76
SEC39	YLR440C	PCP1	P53259	346 aa		4.04	□□□□□ -1.76
SEC39	YLR440C	PIR3	Q03180	325 aa		4.04	□□□□□ -1.76
SEC39	YLR440C	YKL023C-A	Q2V2P3	75 aa		4.04	□□□□□ -1.76
SEC39	YLR440C	SCS22	Q6Q595	175 aa		4.04	□□□□□ -1.76
SEC39	YLR440C	IRA2	P19158	3079 aa		4.04	□□□□□ -1.76
SEC39	YLR440C	YCR006C	P25350	157 aa		4.03	□□□□□ -1.76
SEC39	YLR440C	YER135C	P40082	130 aa		4.03	□□□□□ -1.76
SEC39	YLR440C	SWT21	P53873	357 aa	Predicted RBP	4.03	□□□□□ -1.76
SEC39	YLR440C	NPC2	Q12408	173 aa		4.03	□□□□□ -1.76
SEC39	YLR440C	YDR381C-A	Q3E6R5	114 aa		4.03	□□□□□ -1.76
SEC39	YLR440C	TDA8	Q6B2U8	126 aa		4.03	□□□□□ -1.76
SEC39	YLR440C	YFR032C-B	Q8TGU2	87 aa		4.03	□□□□□ -1.76
SEC39	YLR440C	CYR1	P08678	2026 aa	Known RBP	4.03	□□□□□ -1.76
SEC39	YLR440C	SDH3	P33421	198 aa		4.03	□□□□□ -1.76
SEC39	YLR440C	SPG3	Q04398	127 aa	Predicted RBP	4.03	□□□□□ -1.76
SEC39	YLR440C	YMR316C-A	I2HB70	103 aa		4.02	□□□□□ -1.77
SEC39	YLR440C	YHR213W	P0CI67	198 aa		4.02	□□□□□ -1.77
SEC39	YLR440C	YKL044W	P36092	106 aa		4.02	□□□□□ -1.77
SEC39	YLR440C	PET8	P38921	284 aa		4.02	□□□□□ -1.77
SEC39	YLR440C	NRM1	P53718	249 aa		4.02	□□□□□ -1.77
SEC39	YLR440C	YDR102C	Q03864	110 aa		4.02	□□□□□ -1.77
SEC39	YLR440C	RPB9	P27999	122 aa		4.01	□□□□□ -1.77
SEC39	YLR440C	YKR045C	P36138	183 aa		4.01	□□□□□ -1.77
SEC39	YLR440C	YFL019C	P43576	117 aa		4.01	□□□□□ -1.77
SEC39	YLR440C	HUR1	P45820	110 aa		4.01	□□□□□ -1.77
SEC39	YLR440C	USV1	Q12132	391 aa		4.01	□□□□□ -1.77
SEC39	YLR440C	TIM9	O74700	87 aa		4.01	□□□□□ -1.77
SEC39	YLR440C	SRX1	P36077	127 aa		4.01	□□□□□ -1.77
SEC39	YLR440C	UTH1	P36135	365 aa		4.01	□□□□□ -1.77
SEC39	YLR440C	YMR295C	Q03559	197 aa		4.01	□□□□□ -1.77
SEC39	YLR440C	YOR015W	Q12169	119 aa		4.01	□□□□□ -1.77
SEC39	YLR440C	FZF1	P32805	299 aa		4	□□□□□ -1.77
SEC39	YLR440C	YAR068W	P39564	161 aa		4	□□□□□ -1.77
SEC39	YLR440C	IMP1	P28627	190 aa		4	□□□□□ -1.77
SEC39	YLR440C	EDC2	P40023	145 aa	Predicted RBP	4	□□□□□ -1.77
SEC39	YLR440C	RSM18	P40033	138 aa		4	□□□□□ -1.77
SEC39	YLR440C	ICY1	Q04329	127 aa		4	□□□□□ -1.77
SEC39	YLR440C	LPP1	Q04396	274 aa		4	□□□□□ -1.77
SEC39	YLR440C	YEL045C	P32616	141 aa		3.99	□□□□□ -1.77
SEC39	YLR440C	GPX1	P36014	167 aa		3.99	□□□□□ -1.77
SEC39	YLR440C	YPT10	P38146	199 aa		3.99	□□□□□ -1.77
SEC39	YLR440C	LSM6	Q06406	86 aa	Known RBP	3.99	□□□□□ -1.77
SEC39	YLR440C	YOL014W	Q08110	124 aa		3.99	□□□□□ -1.77
SEC39	YLR440C	MHF2	Q3E829	80 aa		3.99	□□□□□ -1.77
SEC39	YLR440C	YMR181C	Q03231	154 aa		3.98	□□□□□ -1.77
SEC39	YLR440C	AYT1	Q12226	474 aa		3.98	□□□□□ -1.77
SEC39	YLR440C	SMT3	Q12306	101 aa	Known RBP	3.98	□□□□□ -1.77
SEC39	YLR440C	MRPL31	P14063	131 aa	Predicted RBP	3.98	□□□□□ -1.77
SEC39	YLR440C	YBL008W-A	Q3E821	79 aa		3.98	□□□□□ -1.77
SEC39	YLR440C	YEL028W	P39989	153 aa		3.97	□□□□□ -1.77
SEC39	YLR440C	ICS3	P47034	131 aa		3.97	□□□□□ -1.77
SEC39	YLR440C	BOL2	P53082	120 aa		3.97	□□□□□ -1.77
SEC39	YLR440C	ACC1	Q00955	2233 aa	Known RBP	3.97	□□□□□ -1.77
SEC39	YLR440C	PIR1	Q03178	341 aa		3.97	□□□□□ -1.77
SEC39	YLR440C	YHP1	Q04116	353 aa		3.97	□□□□□ -1.77
SEC39	YLR440C	YOR268C	Q08734	132 aa		3.97	□□□□□ -1.77
SEC39	YLR440C	MDM35	O60200	86 aa		3.96	□□□□□ -1.78
SEC39	YLR440C	YER187W	P40102	141 aa		3.96	□□□□□ -1.78
SEC39	YLR440C	YLR346C	Q06139	101 aa		3.96	□□□□□ -1.78
SEC39	YLR440C	YPL247C	Q12523	523 aa		3.96	□□□□□ -1.78
SEC39	YLR440C	MRP10	O75012	95 aa		3.95	□□□□□ -1.78
SEC39	YLR440C	YCR041W	P37265	110 aa		3.95	□□□□□ -1.78
SEC39	YLR440C	CIS3	P47001	227 aa		3.95	□□□□□ -1.78
SEC39	YLR440C	YLR146W-A	Q2V2P1	62 aa		3.95	□□□□□ -1.78
SEC39	YLR440C	RNQ1	P25367	405 aa		3.95	□□□□□ -1.78
SEC39	YLR440C	PAU2	P32612	120 aa		3.95	□□□□□ -1.78
SEC39	YLR440C	VTC1	P40046	129 aa	RIP-Chip data	3.95	□□□□□ -1.78	not detected
SEC39	YLR440C	VPS55	P47111	140 aa		3.95	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 47 ms