RNA–Protein interactions for RNA: YDR136C

VPS61, Transcript of Dubious open reading frame, yeast

Gene VPS61, Length 573 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS61	YDR136C	YLR296W	Q05898	108 aa		4.96	□□□□□ -1.62
VPS61	YDR136C	YLR112W	Q12130	139 aa		4.96	□□□□□ -1.62
VPS61	YDR136C	AQY1	P0CD91	305 aa		4.95	□□□□□ -1.62
VPS61	YDR136C	YHR140W	P38842	239 aa		4.95	□□□□□ -1.62
VPS61	YDR136C	SNU13	P39990	126 aa	Known RBP	4.95	□□□□□ -1.62
VPS61	YDR136C	SPI1	P40092	148 aa		4.95	□□□□□ -1.62
VPS61	YDR136C	ADH6	Q04894	360 aa	Known RBP	4.95	□□□□□ -1.62
VPS61	YDR136C	FCF1	Q05498	189 aa	Predicted RBP	4.95	□□□□□ -1.62
VPS61	YDR136C	ATG39	Q06159	398 aa		4.95	□□□□□ -1.62
VPS61	YDR136C	PBP4	Q07362	185 aa	Known RBP	4.95	□□□□□ -1.62
VPS61	YDR136C	IRC23	Q08416	157 aa		4.95	□□□□□ -1.62
VPS61	YDR136C	YPL278C	Q08990	100 aa		4.95	□□□□□ -1.62
VPS61	YDR136C	TIM22	Q12328	207 aa		4.95	□□□□□ -1.62
VPS61	YDR136C	PFY1	P07274	126 aa		4.94	□□□□□ -1.62
VPS61	YDR136C	ARO2	P28777	376 aa	Known RBP	4.94	□□□□□ -1.62
VPS61	YDR136C	YPL073C	P40323	161 aa		4.94	□□□□□ -1.62
VPS61	YDR136C	UBC7	Q02159	165 aa		4.94	□□□□□ -1.62
VPS61	YDR136C	PCL2	P25693	308 aa		4.93	□□□□□ -1.62
VPS61	YDR136C	YHL044W	P38727	235 aa		4.93	□□□□□ -1.62
VPS61	YDR136C	POR2	P40478	281 aa		4.93	□□□□□ -1.62
VPS61	YDR136C	YGL260W	P53056	76 aa		4.93	□□□□□ -1.62
VPS61	YDR136C	GEP3	Q08622	556 aa		4.93	□□□□□ -1.62
VPS61	YDR136C	DGA1	Q08650	418 aa		4.93	□□□□□ -1.62
VPS61	YDR136C	FCY1	Q12178	158 aa		4.93	□□□□□ -1.62
VPS61	YDR136C	DFM1	Q12743	341 aa	Known RBP	4.93	□□□□□ -1.62
VPS61	YDR136C	ADH1	P00330	348 aa	Known RBP	4.92	□□□□□ -1.62
VPS61	YDR136C	CIN5	P40917	295 aa		4.92	□□□□□ -1.62
VPS61	YDR136C	TOS6	P48560	102 aa		4.92	□□□□□ -1.62
VPS61	YDR136C	YOL160W	Q08321	113 aa		4.92	□□□□□ -1.62
VPS61	YDR136C	YPL257W	Q08974	193 aa		4.92	□□□□□ -1.62
VPS61	YDR136C	PHO85	P17157	305 aa		4.91	□□□□□ -1.62
VPS61	YDR136C	YKL070W	P36087	169 aa		4.91	□□□□□ -1.62
VPS61	YDR136C	YKR041W	P36134	250 aa		4.91	□□□□□ -1.62
VPS61	YDR136C	WWM1	P43582	211 aa	Known RBP	4.91	□□□□□ -1.62
VPS61	YDR136C	YGR219W	P53307	113 aa		4.91	□□□□□ -1.62
VPS61	YDR136C	ELC1	Q03071	99 aa		4.91	□□□□□ -1.62
VPS61	YDR136C	SCW10	Q04951	389 aa		4.91	□□□□□ -1.62
VPS61	YDR136C	SLO1	Q3E784	85 aa		4.91	□□□□□ -1.62
VPS61	YDR136C	COA3	Q3E7B2	85 aa		4.91	□□□□□ -1.62
VPS61	YDR136C	HMRA2	P0CY13	119 aa		4.9	□□□□□ -1.63
VPS61	YDR136C	HYP2	P23301	157 aa	Known RBP	4.9	□□□□□ -1.63
VPS61	YDR136C	POP7	P38291	140 aa		4.9	□□□□□ -1.63
VPS61	YDR136C	LCB3	P47013	409 aa		4.9	□□□□□ -1.63
VPS61	YDR136C	SBH2	P52871	88 aa		4.9	□□□□□ -1.63
VPS61	YDR136C	RDL1	Q12305	139 aa	Known RBP	4.9	□□□□□ -1.63
VPS61	YDR136C	MIC12	P38341	106 aa		4.89	□□□□□ -1.63
VPS61	YDR136C	SNF11	P38956	169 aa		4.89	□□□□□ -1.63
VPS61	YDR136C	URM1	P40554	99 aa	Predicted RBP	4.89	□□□□□ -1.63
VPS61	YDR136C	ATP23	P53722	227 aa		4.89	□□□□□ -1.63
VPS61	YDR136C	DIA1	P54005	336 aa		4.89	□□□□□ -1.63
VPS61	YDR136C	KTI12	P34253	313 aa	Known RBP	4.88	□□□□□ -1.63
VPS61	YDR136C	RPL32	P38061	130 aa	Known RBP	4.88	□□□□□ -1.63
VPS61	YDR136C	YEL067C	P39978	195 aa		4.88	□□□□□ -1.63
VPS61	YDR136C	MRPL49	P40858	161 aa	Predicted RBP	4.88	□□□□□ -1.63
VPS61	YDR136C	BNA1	P47096	177 aa		4.88	□□□□□ -1.63
VPS61	YDR136C	AGA1	P32323	725 aa		4.87	□□□□□ -1.63
VPS61	YDR136C	YER181C	P40097	107 aa		4.87	□□□□□ -1.63
VPS61	YDR136C	YPL261C	Q08976	102 aa		4.87	□□□□□ -1.63
VPS61	YDR136C	TOR2	P32600	2474 aa	Known RBP	4.87	□□□□□ -1.63
VPS61	YDR136C	BPH1	P25356	2167 aa		4.87	□□□□□ -1.63
VPS61	YDR136C	RPL42A	P0CX27	106 aa	Known RBP	4.86	□□□□□ -1.63
VPS61	YDR136C	RPL42B	P0CX28	106 aa	Known RBP	4.86	□□□□□ -1.63
VPS61	YDR136C	SPS100	P13130	326 aa		4.86	□□□□□ -1.63
VPS61	YDR136C	YHR022C	P38763	256 aa		4.86	□□□□□ -1.63
VPS61	YDR136C	YNR077C	P53758	84 aa		4.86	□□□□□ -1.63
VPS61	YDR136C	YOR097C	Q12274	175 aa	Predicted RBP	4.86	□□□□□ -1.63
VPS61	YDR136C	YDL022C-A	P0C5L6	82 aa		4.85	□□□□□ -1.63
VPS61	YDR136C	CDC43	P18898	376 aa		4.85	□□□□□ -1.63
VPS61	YDR136C	YPT53	P36019	220 aa		4.85	□□□□□ -1.63
VPS61	YDR136C	OXA1	P39952	402 aa		4.85	□□□□□ -1.63
VPS61	YDR136C	YNL217W	P40152	326 aa		4.85	□□□□□ -1.63
VPS61	YDR136C	YGR025W	P53216	100 aa		4.85	□□□□□ -1.63
VPS61	YDR136C	YML122C	Q03207	126 aa		4.85	□□□□□ -1.63
VPS61	YDR136C	MSA1	Q08471	629 aa		4.85	□□□□□ -1.63
VPS61	YDR136C	YNL194C	P40169	301 aa		4.84	□□□□□ -1.63
VPS61	YDR136C	GLO1	P50107	326 aa		4.84	□□□□□ -1.63
VPS61	YDR136C	YMR181C	Q03231	154 aa		4.84	□□□□□ -1.63
VPS61	YDR136C	CCW12	Q12127	133 aa		4.84	□□□□□ -1.63
VPS61	YDR136C	YOR008C-A	Q3E7B9	74 aa		4.84	□□□□□ -1.63
VPS61	YDR136C	IGO2	Q9P305	131 aa		4.84	□□□□□ -1.63
VPS61	YDR136C	IRA2	P19158	3079 aa		4.83	□□□□□ -1.64
VPS61	YDR136C	VAR1	P02381	398 aa		4.83	□□□□□ -1.64
VPS61	YDR136C	RPS8A	P0CX39	200 aa	Known RBP	4.83	□□□□□ -1.64
VPS61	YDR136C	RPS8B	P0CX40	200 aa	Known RBP	4.83	□□□□□ -1.64
VPS61	YDR136C	YIR020C	P40575	100 aa		4.83	□□□□□ -1.64
VPS61	YDR136C	AIM11	P87275	137 aa		4.83	□□□□□ -1.64
VPS61	YDR136C	TMC1	Q08422	150 aa	Predicted RBP	4.83	□□□□□ -1.64
VPS61	YDR136C	YBR200W-A	Q3E755	54 aa		4.83	□□□□□ -1.64
VPS61	YDR136C	VTC1	P40046	129 aa	RIP-Chip data	4.82	□□□□□ -1.64	not detected
VPS61	YDR136C	YIP3	P53633	176 aa		4.82	□□□□□ -1.64
VPS61	YDR136C	AIM34	Q03673	198 aa		4.82	□□□□□ -1.64
VPS61	YDR136C	LSM6	Q06406	86 aa	Known RBP	4.82	□□□□□ -1.64
VPS61	YDR136C	PRM3	Q08931	133 aa		4.82	□□□□□ -1.64
VPS61	YDR136C	YPR013C	Q12145	317 aa		4.82	□□□□□ -1.64
VPS61	YDR136C	YOL085C	Q99345	113 aa		4.82	□□□□□ -1.64
VPS61	YDR136C	IRA1	P18963	3092 aa		4.82	□□□□□ -1.64
VPS61	YDR136C	INO2	P26798	304 aa		4.81	□□□□□ -1.64
VPS61	YDR136C	NHP2	P32495	156 aa	Predicted RBP	4.81	□□□□□ -1.64
VPS61	YDR136C	VMA11	P32842	164 aa		4.81	□□□□□ -1.64
VPS61	YDR136C	DCV1	P43595	202 aa		4.81	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 97.5 ms