RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 PKP1Q13835 747 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 PSMD6Q15008 389 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 MAPRE1Q15691 268 aaKnown RBP8.15□□□□□ -1.1
CUX1-219ENST00000606749 LPAL2Q16609 132 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 KNOP1Q1ED39 458 aaKnown RBP8.15□□□□□ -1.1
CUX1-219ENST00000606749 RSPO4Q2I0M5 234 aaPredicted RBP8.15□□□□□ -1.1
CUX1-219ENST00000606749 RESP18Q5W5W9 173 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 HEATR6Q6AI08 1181 aaKnown RBP8.15□□□□□ -1.1
CUX1-219ENST00000606749 ATL3Q6DD88 541 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 FSTL4Q6MZW2 842 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 CC2D1AQ6P1N0 951 aaPredicted RBP8.15□□□□□ -1.1
CUX1-219ENST00000606749 VSTM1Q6UX27 236 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 C4orf50Q6ZRC1 276 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 DGLUCYQ7Z3D6 616 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 LONP2Q86WA8 852 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 C12orf56Q8IXR9 622 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 ARL14EPQ8N8R7 260 aaPredicted RBP8.15□□□□□ -1.1
CUX1-219ENST00000606749 FSIP1Q8NA03 581 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 XXYLT1Q8NBI6 393 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 CCDC127Q96BQ5 260 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 SPATA17Q96L03 361 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 CEP295NLQ96MC4 621 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 FNBP1Q96RU3 617 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 CGRRF1Q99675 332 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 SYT15Q9BQS2 421 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 MRPL45Q9BRJ2 306 aaKnown RBP8.15□□□□□ -1.1
CUX1-219ENST00000606749 FBRSL1Q9HCM7 1045 aaKnown RBP8.15□□□□□ -1.1
CUX1-219ENST00000606749 TRPC7Q9HCX4 862 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 FAM13BQ9NYF5 915 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 GCNT4Q9P109 453 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 RCOR1Q9UKL0 485 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 CFAP45Q9UL16 551 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 RAB23Q9ULC3 237 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 NME7Q9Y5B8 376 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 DENND4CQ5VZ89 1909 aa8.15□□□□□ -1.11
CUX1-219ENST00000606749 OTOGLQ3ZCN5 2332 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 ZNF292O60281 2723 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 UBE4BO95155 1302 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 TRAV19A0A0A6YYK7 116 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 C2orf78A6NCI8 922 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 TACC1O75410 805 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 USP17L7P0C7H9 530 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 PTPN1P18031 435 aaKnown RBP8.14□□□□□ -1.11
CUX1-219ENST00000606749 HDCP19113 662 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 MYL6P60660 151 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 USP46P62068 366 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 AMPD2Q01433 879 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 CYP27A1Q02318 531 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 DNM1Q05193 864 aaKnown RBP8.14□□□□□ -1.11
CUX1-219ENST00000606749 SRSF5Q13243 272 aaKnown RBP8.14□□□□□ -1.11
CUX1-219ENST00000606749 SIM2Q14190 667 aaPredicted RBP8.14□□□□□ -1.11
CUX1-219ENST00000606749 MTF1Q14872 753 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 PDGFRLQ15198 375 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 ZNF77Q15935 545 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 BMT2Q1RMZ1 405 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 WDR72Q3MJ13 1102 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 LAIR1Q6GTX8 287 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 PKN3Q6P5Z2 889 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 PRR23BQ6ZRT6 265 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 HS2ST1Q7LGA3 356 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 WDR5BQ86VZ2 330 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 HSCBQ8IWL3 235 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 OR6B3Q8NGW1 331 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 MYCBPAPQ8TBZ2 947 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 OSCP1Q8WVF1 389 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 MYLPFQ96A32 169 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 PCED1BQ96HM7 432 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 GZF1Q9H116 711 aaPredicted RBP8.14□□□□□ -1.11
CUX1-219ENST00000606749 LINC00597Q9H2U6 94 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 SNX25Q9H3E2 840 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 ECT2Q9H8V3 914 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 PARD6AQ9NPB6 346 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 DUS2Q9NX74 493 aaKnown RBP8.14□□□□□ -1.11
CUX1-219ENST00000606749 CGNQ9P2M7 1197 aaKnown RBP8.14□□□□□ -1.11
CUX1-219ENST00000606749 GMEB2Q9UKD1 530 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 GVINP1Q7Z2Y8 2422 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 SPTBN4Q9H254 2564 aa8.14□□□□□ -1.11
CUX1-219ENST00000606749 GPR179Q6PRD1 2367 aa8.13□□□□□ -1.11
CUX1-219ENST00000606749 MED19A0JLT2 244 aaPredicted RBP8.13□□□□□ -1.11
CUX1-219ENST00000606749 PRR5-ARHGAP8B1AHC4 643 aa8.13□□□□□ -1.11
CUX1-219ENST00000606749 F8VP50 259 aa8.13□□□□□ -1.11
CUX1-219ENST00000606749 TRIM66O15016 1216 aa8.13□□□□□ -1.11
CUX1-219ENST00000606749 KLRC4O43908 158 aa8.13□□□□□ -1.11
CUX1-219ENST00000606749 EXOC3O60645 756 aa8.13□□□□□ -1.11
CUX1-219ENST00000606749 ATG13O75143 517 aa8.13□□□□□ -1.11
CUX1-219ENST00000606749 STAU1O95793 577 aaKnown RBP8.13□□□□□ -1.11
CUX1-219ENST00000606749 EGFP01133 1207 aa8.13□□□□□ -1.11
CUX1-219ENST00000606749 CKMP06732 381 aa8.13□□□□□ -1.11
CUX1-219ENST00000606749 RETP07949 1114 aa8.13□□□□□ -1.11
CUX1-219ENST00000606749 SLFN14P0C7P3 912 aa8.13□□□□□ -1.11
CUX1-219ENST00000606749 TCF3P15923 654 aa8.13□□□□□ -1.11
CUX1-219ENST00000606749 PFKLP17858 780 aa8.13□□□□□ -1.11
CUX1-219ENST00000606749 SDHBP21912 280 aa8.13□□□□□ -1.11
CUX1-219ENST00000606749 ATICP31939 592 aa8.13□□□□□ -1.11
CUX1-219ENST00000606749 GJA4P35212 333 aa8.13□□□□□ -1.11
CUX1-219ENST00000606749 ATXN1P54253 815 aaKnown RBP8.13□□□□□ -1.11
CUX1-219ENST00000606749 TNNC1P63316 161 aa8.13□□□□□ -1.11
CUX1-219ENST00000606749 NOP14P78316 857 aaKnown RBP8.13□□□□□ -1.11
CUX1-219ENST00000606749 CLDN10P78369 228 aa8.13□□□□□ -1.11
CUX1-219ENST00000606749 ARHGAP8P85298 464 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms