RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 FAM163BP0C2L3 166 aa10.99□□□□□ -0.65
CLK3-205ENST00000561673 ATICP31939 592 aa10.99□□□□□ -0.65
CLK3-205ENST00000561673 GRIK1P39086 918 aa10.99□□□□□ -0.65
CLK3-205ENST00000561673 TNNC1P63316 161 aa10.99□□□□□ -0.65
CLK3-205ENST00000561673 CYP27A1Q02318 531 aa10.99□□□□□ -0.65
CLK3-205ENST00000561673 MAPRE1Q15691 268 aaKnown RBP10.99□□□□□ -0.65
CLK3-205ENST00000561673 MDH1BQ5I0G3 518 aa10.99□□□□□ -0.65
CLK3-205ENST00000561673 WDR44Q5JSH3 913 aa10.99□□□□□ -0.65
CLK3-205ENST00000561673 TDRD10Q5VZ19 366 aaKnown RBP10.99□□□□□ -0.65
CLK3-205ENST00000561673 TXNDC11Q6PKC3 985 aa10.99□□□□□ -0.65
CLK3-205ENST00000561673 VSTM1Q6UX27 236 aa10.99□□□□□ -0.65
CLK3-205ENST00000561673 MAMSTRQ6ZN01 415 aa10.99□□□□□ -0.65
CLK3-205ENST00000561673 RALGPS2Q86X27 583 aaPredicted RBP10.99□□□□□ -0.65
CLK3-205ENST00000561673 OR6B3Q8NGW1 331 aa10.99□□□□□ -0.65
CLK3-205ENST00000561673 RIN3Q8TB24 985 aa10.99□□□□□ -0.65
CLK3-205ENST00000561673 SYAP1Q96A49 352 aaPredicted RBP10.99□□□□□ -0.65
CLK3-205ENST00000561673 MSANTD3Q96H12 275 aa10.99□□□□□ -0.65
CLK3-205ENST00000561673 PCED1BQ96HM7 432 aa10.99□□□□□ -0.65
CLK3-205ENST00000561673 SPATA17Q96L03 361 aa10.99□□□□□ -0.65
CLK3-205ENST00000561673 CYP2S1Q96SQ9 504 aa10.99□□□□□ -0.65
CLK3-205ENST00000561673 FAM83CQ9BQN1 747 aa10.99□□□□□ -0.65
CLK3-205ENST00000561673 SCAND2PQ9GZW5 306 aaPredicted RBP10.99□□□□□ -0.65
CLK3-205ENST00000561673 GOLPH3LQ9H4A5 285 aa10.99□□□□□ -0.65
CLK3-205ENST00000561673 DPEP3Q9H4B8 488 aa10.99□□□□□ -0.65
CLK3-205ENST00000561673 PRMT8Q9NR22 394 aaPredicted RBP10.99□□□□□ -0.65
CLK3-205ENST00000561673 NXF1Q9UBU9 619 aaKnown RBP10.99□□□□□ -0.65
CLK3-205ENST00000561673 ATP6V1DQ9Y5K8 247 aa10.99□□□□□ -0.65
CLK3-205ENST00000561673 CACNA1IQ9P0X4 2223 aa10.99□□□□□ -0.65
CLK3-205ENST00000561673 DNAH14Q0VDD8 3507 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 COL4A2P08572 1712 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 A0A1W2PQ27 194 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 A0A1W2PQ64 194 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 A0A1W2PQD8 194 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 OTOL1A6NHN0 477 aaPredicted RBP10.98□□□□□ -0.65
CLK3-205ENST00000561673 RHOBTB3O94955 611 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 VNN1O95497 513 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 NR3C1P04150 777 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 PTPN1P18031 435 aaKnown RBP10.98□□□□□ -0.65
CLK3-205ENST00000561673 CTHP32929 405 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 AP3M2P53677 418 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 CDH8P55286 799 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 DLG4P78352 724 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 DPYDQ12882 1025 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 BIRC3Q13489 604 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 NCOA4Q13772 614 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 GAS6Q14393 721 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 ZNF268Q14587 947 aaPredicted RBP10.98□□□□□ -0.65
CLK3-205ENST00000561673 PON2Q15165 354 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 ITPRIPL2Q3MIP1 535 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 TRIM68Q6AZZ1 485 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 C1orf228Q6PIY5 440 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 FSIP1Q8NA03 581 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 ZBTB44Q8NCP5 570 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 ATRIPQ8WXE1 791 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 NELL1Q92832 810 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 ELMO3Q96BJ8 720 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 SLC22A12Q96S37 553 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 EBF3Q9H4W6 596 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 VRTNQ9H8Y1 702 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 GDPD2Q9HCC8 539 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 TRPC7Q9HCX4 862 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 HPS4Q9NQG7 708 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 RBM12Q9NTZ6 932 aaKnown RBP10.98□□□□□ -0.65
CLK3-205ENST00000561673 ZSCAN32Q9NX65 697 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 PCDHGA2Q9Y5H1 932 aa10.98□□□□□ -0.65
CLK3-205ENST00000561673 RIF1Q5UIP0 2472 aaKnown RBP10.98□□□□□ -0.65
CLK3-205ENST00000561673 C2orf78A6NCI8 922 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 A8MXQ7 604 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 F8VP50 259 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 TRIM66O15016 1216 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 CALUO43852 315 aaPredicted RBP10.97□□□□□ -0.65
CLK3-205ENST00000561673 KINO60870 393 aaKnown RBP10.97□□□□□ -0.65
CLK3-205ENST00000561673 ZNF202O95125 648 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 TDGF1P13385 188 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 CACNA2D1P54289 1103 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 USP46P62068 366 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 RUNX3Q13761 415 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 ZNF699Q32M78 642 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 CEP135Q66GS9 1140 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 KRBA2Q6ZNG9 492 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 DENND5BQ6ZUT9 1274 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 ARL14EPQ8N8R7 260 aaPredicted RBP10.97□□□□□ -0.65
CLK3-205ENST00000561673 SUMF1Q8NBK3 374 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 B3GALNT2Q8NCR0 500 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 CEP295NLQ96MC4 621 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 IER2Q9BTL4 223 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 B3GNT5Q9BYG0 378 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 SMYD3Q9H7B4 428 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 KIF9Q9HAQ2 790 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 TMEM30AQ9NV96 361 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 GCNT4Q9P109 453 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 MAPK8IP1Q9UQF2 711 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 TRAF3IP3Q9Y228 551 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 FRMD4BQ9Y2L6 1034 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 MIA3Q5JRA6 1907 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 TICRRQ7Z2Z1 1910 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 F5P12259 2224 aa10.97□□□□□ -0.65
CLK3-205ENST00000561673 PTPRZ1P23471 2315 aaPredicted RBP10.97□□□□□ -0.65
CLK3-205ENST00000561673 TRAV19A0A0A6YYK7 116 aa10.96□□□□□ -0.65
CLK3-205ENST00000561673 CLDN5O00501 218 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms