RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 DPP7Q9UHL4 492 aa6.85□□□□□ -1.31
LRRC28-220ENST00000561253 CPA4Q9UI42 421 aa6.85□□□□□ -1.31
LRRC28-220ENST00000561253 FEM1BQ9UK73 627 aa6.85□□□□□ -1.31
LRRC28-220ENST00000561253 TPCN1Q9ULQ1 816 aa6.85□□□□□ -1.31
LRRC28-220ENST00000561253 INVSQ9Y283 1065 aa6.85□□□□□ -1.31
LRRC28-220ENST00000561253 GPR45Q9Y5Y3 372 aa6.85□□□□□ -1.31
LRRC28-220ENST00000561253 DNAH12Q6ZR08 3092 aa6.85□□□□□ -1.31
LRRC28-220ENST00000561253 SMCHD1A6NHR9 2005 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 DOCK3Q8IZD9 2030 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 KIAA0100Q14667 2235 aaKnown RBP6.84□□□□□ -1.31
LRRC28-220ENST00000561253 KLF18A0A0U1RQI7 1052 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 A0A1B0GTL3 188 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 FFAR3O14843 346 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 NRP2O60462 931 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 KLHL18O94889 574 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 LARGE1O95461 756 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 HMGCRP04035 888 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 OSMP13725 252 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 SMARCA1P28370 1054 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 RECQLP46063 649 aaPredicted RBP6.84□□□□□ -1.31
LRRC28-220ENST00000561253 GPR15P49685 360 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 RAB27AP51159 221 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 SLC5A3P53794 718 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 CDK17Q00537 523 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 TOP3AQ13472 1001 aaPredicted RBP6.84□□□□□ -1.31
LRRC28-220ENST00000561253 MCTP2Q6DN12 878 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 TMTC3Q6ZXV5 915 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 KCNK18Q7Z418 384 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 CATIPQ7Z7H3 387 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 FAM160B2Q86V87 743 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 LYSMD2Q8IV50 215 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 ADGRF4Q8IZF3 695 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 ADGRG2Q8IZP9 1017 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 SRBD1Q8N5C6 995 aaKnown RBP6.84□□□□□ -1.31
LRRC28-220ENST00000561253 ANKRD13CQ8N6S4 541 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 FANCBQ8NB91 859 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 NUDT10Q8NFP7 164 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 CHURC1Q8WUH1 139 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 USP6NLQ92738 828 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 NUDT11Q96G61 164 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 SPZ1Q9BXG8 430 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 MOV10L1Q9BXT6 1211 aaKnown RBP6.84□□□□□ -1.31
LRRC28-220ENST00000561253 SPATC1LQ9H0A9 340 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 PRDM12Q9H4Q4 367 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 BARX1Q9HBU1 254 aaPredicted RBP6.84□□□□□ -1.31
LRRC28-220ENST00000561253 LUC7LQ9NQ29 371 aaKnown RBP6.84□□□□□ -1.31
LRRC28-220ENST00000561253 PDRG1Q9NUG6 133 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 GJD2Q9UKL4 321 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 RIPK3Q9Y572 518 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 CYP46A1Q9Y6A2 500 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 CDY2AQ9Y6F7 541 aa6.84□□□□□ -1.31
LRRC28-220ENST00000561253 ERICH2A1L162 156 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 KLRF2D3W0D1 207 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 AKAP10O43572 662 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 PCDHGA12O60330 932 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 CTDNEP1O95476 244 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 PARP1P09874 1014 aaKnown RBP6.83□□□□□ -1.32
LRRC28-220ENST00000561253 AGXTP21549 392 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 ETV4P43268 484 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 MTNR1BP49286 362 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 CTCFP49711 727 aaPredicted RBP6.83□□□□□ -1.32
LRRC28-220ENST00000561253 LBX1P52954 281 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 OAZ1P54368 228 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 SNAP25P60880 206 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 SP3Q02447 781 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 GHRHRQ02643 423 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 EIF4HQ15056 248 aaKnown RBP6.83□□□□□ -1.32
LRRC28-220ENST00000561253 PPP2R5AQ15172 486 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 RABEP1Q15276 862 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 ZNF124Q15973 351 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 ME3Q16798 604 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 CCDC96Q2M329 555 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 VMACQ2NL98 169 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 MUM1Q2TAK8 710 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 TCERG1LQ5VWI1 586 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 MICU3Q86XE3 530 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 RAB11FIP4Q86YS3 637 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 LINC01356Q8N9X3 169 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 TXNDC5Q8NBS9 432 aaKnown RBP6.83□□□□□ -1.32
LRRC28-220ENST00000561253 SHCBP1Q8NEM2 672 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 SMCR8Q8TEV9 937 aaPredicted RBP6.83□□□□□ -1.32
LRRC28-220ENST00000561253 ZNF274Q96GC6 653 aaPredicted RBP6.83□□□□□ -1.32
LRRC28-220ENST00000561253 SPATA25Q9BR10 227 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 TEX13BQ9BXU2 312 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 IP6K2Q9UHH9 426 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 DNAI1Q9UI46 699 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 PCDHGA9Q9Y5G4 932 aaKnown RBP6.83□□□□□ -1.32
LRRC28-220ENST00000561253 PCDHGA8Q9Y5G5 932 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 PCDHGA7Q9Y5G6 932 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 PCDHGA6Q9Y5G7 932 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 PCDHGA3Q9Y5H0 932 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 PCDHGA2Q9Y5H1 932 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 ZSWIM8A7E2V4 1837 aa6.83□□□□□ -1.32
LRRC28-220ENST00000561253 ASTN1O14525 1302 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 CCDC69A6NI79 296 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 ZBTB43O43298 467 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 MARCH6O60337 910 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 PFKFB2O60825 505 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 ICAM1P05362 532 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 CELA3BP08861 270 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms