RNA–Protein interactions for RNA: ENST00000559822.1

SPG11-219, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 561 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-219ENST00000559822 GAS6Q14393 721 aa13.11□□□□□ -0.31
SPG11-219ENST00000559822 KCNB1Q14721 858 aa13.11□□□□□ -0.31
SPG11-219ENST00000559822 MTF1Q14872 753 aa13.11□□□□□ -0.31
SPG11-219ENST00000559822 KNOP1Q1ED39 458 aaKnown RBP13.11□□□□□ -0.31
SPG11-219ENST00000559822 LAIR1Q6GTX8 287 aa13.11□□□□□ -0.31
SPG11-219ENST00000559822 CPA6Q8N4T0 437 aa13.11□□□□□ -0.31
SPG11-219ENST00000559822 RDH13Q8NBN7 331 aa13.11□□□□□ -0.31
SPG11-219ENST00000559822 MYLPFQ96A32 169 aa13.11□□□□□ -0.31
SPG11-219ENST00000559822 CCDC127Q96BQ5 260 aa13.11□□□□□ -0.31
SPG11-219ENST00000559822 SPATA17Q96L03 361 aa13.11□□□□□ -0.31
SPG11-219ENST00000559822 BLZF1Q9H2G9 400 aa13.11□□□□□ -0.31
SPG11-219ENST00000559822 EBF3Q9H4W6 596 aa13.11□□□□□ -0.31
SPG11-219ENST00000559822 CCL26Q9Y258 94 aa13.11□□□□□ -0.31
SPG11-219ENST00000559822 GPR179Q6PRD1 2367 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 PRR5-ARHGAP8B1AHC4 643 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 EXOC3O60645 756 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 PHACTR2O75167 634 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 TADA3O75528 432 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 STAU1O95793 577 aaKnown RBP13.1□□□□□ -0.31
SPG11-219ENST00000559822 PDGFRBP09619 1106 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 SLFN14P0C7P3 912 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 BDNFP23560 247 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 LMO2P25791 158 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 HOXA6P31267 233 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 GNL1P36915 607 aaPredicted RBP13.1□□□□□ -0.31
SPG11-219ENST00000559822 AFMP43652 599 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 PPP3CCP48454 512 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 AP3M2P53677 418 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 ARHGAP8P85298 464 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 CYP27A1Q02318 531 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 TMEM196Q5HYL7 178 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 SCARA3Q6AZY7 606 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 PRR23BQ6ZRT6 265 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 Q6ZS52 159 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 DENND5BQ6ZUT9 1274 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 DGLUCYQ7Z3D6 616 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 STKLD1Q8NE28 680 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 OR6B3Q8NGW1 331 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 MYCBPAPQ8TBZ2 947 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 ATP2A3Q93084 1043 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 SYAP1Q96A49 352 aaPredicted RBP13.1□□□□□ -0.31
SPG11-219ENST00000559822 RMDN1Q96DB5 314 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 SLC39A2Q9NP94 309 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 CRTAC1Q9NQ79 661 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 HPS4Q9NQG7 708 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 EXOC1Q9NV70 894 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 USP25Q9UHP3 1055 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 RCOR1Q9UKL0 485 aa13.1□□□□□ -0.31
SPG11-219ENST00000559822 CHURC1-FNTBB4DL54 471 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 TRDMT1O14717 391 aaKnown RBP13.09□□□□□ -0.31
SPG11-219ENST00000559822 HCRTO43612 131 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 LRP3O75074 770 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 ATP2C2O75185 946 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 CLSTN1O94985 981 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 MYL1P05976 194 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 DRD1P21728 446 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 IFNAR2P48551 515 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 FNTBP49356 437 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 NR1H3Q13133 447 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 PSMD2Q13200 908 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 CUL4BQ13620 913 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 SIM2Q14190 667 aaPredicted RBP13.09□□□□□ -0.31
SPG11-219ENST00000559822 ZNF77Q15935 545 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 CCDC142Q17RM4 750 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 WDR72Q3MJ13 1102 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 FBXO43Q4G163 708 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 TRIM68Q6AZZ1 485 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 CCDC26Q8TAB7 109 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 OSCP1Q8WVF1 389 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 PCED1BQ96HM7 432 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 ELOVL4Q9GZR5 314 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 DUS2Q9NX74 493 aaKnown RBP13.09□□□□□ -0.31
SPG11-219ENST00000559822 TRPM5Q9NZQ8 1165 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 USP18Q9UMW8 372 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 ATP8B3O60423 1300 aa13.09□□□□□ -0.31
SPG11-219ENST00000559822 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.08□□□□□ -0.32
SPG11-219ENST00000559822 A8MXQ7 604 aa13.08□□□□□ -0.32
SPG11-219ENST00000559822 K7ESF4 209 aa13.08□□□□□ -0.32
SPG11-219ENST00000559822 FOXD2O60548 495 aaPredicted RBP13.08□□□□□ -0.32
SPG11-219ENST00000559822 CST3P01034 146 aaPredicted RBP13.08□□□□□ -0.32
SPG11-219ENST00000559822 RETP07949 1114 aa13.08□□□□□ -0.32
SPG11-219ENST00000559822 ARSAP15289 507 aa13.08□□□□□ -0.32
SPG11-219ENST00000559822 TCF3P15923 654 aa13.08□□□□□ -0.32
SPG11-219ENST00000559822 HDCP19113 662 aa13.08□□□□□ -0.32
SPG11-219ENST00000559822 CASP1P29466 404 aa13.08□□□□□ -0.32
SPG11-219ENST00000559822 NOP14P78316 857 aaKnown RBP13.08□□□□□ -0.32
SPG11-219ENST00000559822 DNM1Q05193 864 aaKnown RBP13.08□□□□□ -0.32
SPG11-219ENST00000559822 USP4Q13107 963 aa13.08□□□□□ -0.32
SPG11-219ENST00000559822 BIRC3Q13489 604 aa13.08□□□□□ -0.32
SPG11-219ENST00000559822 MDH1BQ5I0G3 518 aa13.08□□□□□ -0.32
SPG11-219ENST00000559822 WDR44Q5JSH3 913 aa13.08□□□□□ -0.32
SPG11-219ENST00000559822 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.08□□□□□ -0.32
SPG11-219ENST00000559822 CCDC47Q96A33 483 aaKnown RBP13.08□□□□□ -0.32
SPG11-219ENST00000559822 C8orf48Q96LL4 319 aa13.08□□□□□ -0.32
SPG11-219ENST00000559822 SLITRK1Q96PX8 696 aa13.08□□□□□ -0.32
SPG11-219ENST00000559822 P2RY13Q9BPV8 354 aa13.08□□□□□ -0.32
SPG11-219ENST00000559822 MRPL45Q9BRJ2 306 aaKnown RBP13.08□□□□□ -0.32
SPG11-219ENST00000559822 TTLL2Q9BWV7 592 aa13.08□□□□□ -0.32
SPG11-219ENST00000559822 ECT2Q9H8V3 914 aa13.08□□□□□ -0.32
SPG11-219ENST00000559822 VRTNQ9H8Y1 702 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms