RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 TSPAN16Q9UKR8 245 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 PCDHGC3Q9UN70 934 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.19□□□□□ -0.78
CUX1-216ENST00000558469 PCDHB5Q9Y5E4 795 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 ATP8B3O60423 1300 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 FAM170AA1A519 330 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 MTMR11A4FU01 709 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 M0QYV0 167 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 O00370 1275 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 ABLIM3O94929 683 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 VNN2O95498 520 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 ADH1AP07327 375 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 SPATA31D3P0C874 917 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 CYP2F1P24903 491 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 CDK17Q00537 523 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 FMO1Q01740 532 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 SMARCB1Q12824 385 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 RAB33AQ14088 237 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 PTPROQ16827 1216 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 TPGS2Q68CL5 300 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 DENND1BQ6P3S1 775 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 SPATA31D4Q6ZUB0 917 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 RBM23Q86U06 439 aaKnown RBP10.18□□□□□ -0.78
CUX1-216ENST00000558469 FAM35AQ86V20 835 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 VPS36Q86VN1 386 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 TMTC1Q8IUR5 882 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 TMEM139Q8IV31 216 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 ATAD1Q8NBU5 361 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 UBA3Q8TBC4 463 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 C2orf15Q8WU43 125 aaKnown RBP10.18□□□□□ -0.78
CUX1-216ENST00000558469 MRPL38Q96DV4 380 aaKnown RBP10.18□□□□□ -0.78
CUX1-216ENST00000558469 LRCH3Q96II8 777 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 CCDC42Q96M95 316 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 SYT11Q9BT88 431 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 ZNF518BQ9C0D4 1074 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 TTYH1Q9H313 450 aaPredicted RBP10.18□□□□□ -0.78
CUX1-216ENST00000558469 DEF6Q9H4E7 631 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 PRDM12Q9H4Q4 367 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 KRT82Q9NSB4 513 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 HESX1Q9UBX0 185 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 ADAMTS1Q9UHI8 967 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 SLC27A5Q9Y2P5 690 aa10.18□□□□□ -0.78
CUX1-216ENST00000558469 CDH23Q9H251 3354 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 DENND4CQ5VZ89 1909 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 TMEM265A0A087WTH1 108 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 SSU72P8A0A1W2PR75 194 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 SOWAHDA6NJG2 315 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 PER2O15055 1255 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 TGM5O43548 720 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 AKR1B10O60218 316 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 CLASP2O75122 1294 aaKnown RBP10.17□□□□□ -0.78
CUX1-216ENST00000558469 AP1G2O75843 785 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 FAM200BP0CF97 657 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 ATF2P15336 505 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 FECHP22830 423 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 ELF1P32519 619 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 GRIK1P39086 918 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 CACNA2D1P54289 1103 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 BCAT1P54687 386 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 MAP3K7CLP57077 242 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 SLC8A3P57103 927 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 PDE4CQ08493 712 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 BST2Q10589 180 aaKnown RBP10.17□□□□□ -0.78
CUX1-216ENST00000558469 DUSP4Q13115 394 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 GRIN2CQ14957 1233 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 CFAP221Q4G0U5 840 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 ZNF697Q5TEC3 545 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 ADGRD2Q7Z7M1 963 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 TTC30AQ86WT1 665 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 SCN4BQ8IWT1 228 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 TTC9BQ8N6N2 239 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 ANKRD52Q8NB46 1076 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 SPPL2BQ8TCT7 592 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 CPA5Q8WXQ8 436 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 SECISBP2LQ93073 1101 aaKnown RBP10.17□□□□□ -0.78
CUX1-216ENST00000558469 SMARCD1Q96GM5 515 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 FUBP3Q96I24 572 aaKnown RBP eCLIP10.17□□□□□ -0.78
CUX1-216ENST00000558469 FAM161BQ96MY7 647 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 ZNF830Q96NB3 372 aaPredicted RBP10.17□□□□□ -0.78
CUX1-216ENST00000558469 KCNK16Q96T55 309 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 PCDHB18PQ96TA0 734 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 SEPT5Q99719 369 aaPredicted RBP10.17□□□□□ -0.78
CUX1-216ENST00000558469 SMOQ99835 787 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 DUSP16Q9BY84 665 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 LHX5Q9H2C1 402 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 TLE6Q9H808 572 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 CYP4F11Q9HBI6 524 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 ABCB6Q9NP58 842 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 TMEM30AQ9NV96 361 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 AFF4Q9UHB7 1163 aaKnown RBP10.17□□□□□ -0.78
CUX1-216ENST00000558469 CEP83Q9Y592 693 aa10.17□□□□□ -0.78
CUX1-216ENST00000558469 REV3LO60673 3130 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 DOCK6Q96HP0 2047 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 A0A087X0T9 212 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 TMCO5BA8MYB1 307 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 TULP2O00295 520 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 DDX3XO00571 662 aaKnown RBP eCLIP10.16□□□□□ -0.78
CUX1-216ENST00000558469 PRRG1O14668 218 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 SOAT2O75908 522 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 BEST1O76090 585 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms