RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 RAVER1Q8IY67 606 aaKnown RBP4.93□□□□□ -1.62
CD44-235ENST00000532339 DCBLD1Q8N8Z6 715 aa4.93□□□□□ -1.62
CD44-235ENST00000532339 C1orf162Q8NEQ5 155 aaPredicted RBP4.93□□□□□ -1.62
CD44-235ENST00000532339 SSH3Q8TE77 659 aa4.93□□□□□ -1.62
CD44-235ENST00000532339 PDLIM2Q96JY6 352 aa4.93□□□□□ -1.62
CD44-235ENST00000532339 HEPHQ9BQS7 1158 aa4.93□□□□□ -1.62
CD44-235ENST00000532339 LRFN3Q9BTN0 628 aa4.93□□□□□ -1.62
CD44-235ENST00000532339 SPATA5L1Q9BVQ7 753 aa4.93□□□□□ -1.62
CD44-235ENST00000532339 FOXJ2Q9P0K8 574 aa4.93□□□□□ -1.62
CD44-235ENST00000532339 NEU2Q9Y3R4 380 aa4.93□□□□□ -1.62
CD44-235ENST00000532339 TOGARAM1Q9Y4F4 1720 aa4.93□□□□□ -1.62
CD44-235ENST00000532339 TNFRSF18Q9Y5U5 241 aa4.93□□□□□ -1.62
CD44-235ENST00000532339 ADAMTSL1Q8N6G6 1762 aa4.93□□□□□ -1.62
CD44-235ENST00000532339 SCN4AP35499 1836 aa4.93□□□□□ -1.62
CD44-235ENST00000532339 VPS8Q8N3P4 1428 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 PPLO60437 1756 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 A0A1W2PS29 197 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 GRM6O15303 877 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 SGTAO43765 313 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 ALDH1L1O75891 902 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 ZFPL1O95159 310 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 ZNF37AP17032 561 aaPredicted RBP4.92□□□□□ -1.62
CD44-235ENST00000532339 CHRNA5P30532 468 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 EPHX2P34913 555 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 IARSP41252 1262 aaKnown RBP4.92□□□□□ -1.62
CD44-235ENST00000532339 IL12RB1P42701 662 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 CACNA2D1P54289 1103 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 TMF1P82094 1093 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 TARDBPQ13148 414 aaKnown RBP eCLIP4.92□□□□□ -1.62
CD44-235ENST00000532339 MTMR1Q13613 665 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 COLEC12Q5KU26 742 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 ZNF362Q5T0B9 420 aaPredicted RBP4.92□□□□□ -1.62
CD44-235ENST00000532339 FBXO46Q6PJ61 603 aaPredicted RBP4.92□□□□□ -1.62
CD44-235ENST00000532339 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.92□□□□□ -1.62
CD44-235ENST00000532339 CLNKQ7Z7G1 428 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 CBARPQ8N350 705 aaPredicted RBP4.92□□□□□ -1.62
CD44-235ENST00000532339 Q8NA96 180 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 JADE3Q92613 823 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 KRTAP9-8Q9BYQ0 159 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 PRO3102Q9H379 93 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 HACL1Q9UJ83 578 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 TUBD1Q9UJT1 453 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 PCDHA13Q9Y5I0 950 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 KIF1BO60333 1816 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 CENPFP49454 3210 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 ACEP12821 1306 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 ADGRF5Q8IZF2 1346 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 C4BP0C0L5 1744 aa4.92□□□□□ -1.62
CD44-235ENST00000532339 INSRP06213 1382 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 CPSF1Q10570 1443 aaKnown RBP4.91□□□□□ -1.62
CD44-235ENST00000532339 KLHL33A6NCF5 533 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 ORC4O43929 436 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 AGFG2O95081 481 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 IGLV2-14P01704 120 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 KCNA2P16389 499 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 C5AR1P21730 350 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 FOLR3P41439 243 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 ZNF844Q08AG5 666 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 RAB39AQ14964 217 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 TTF1Q15361 905 aaPredicted RBP4.91□□□□□ -1.62
CD44-235ENST00000532339 SF3B3Q15393 1217 aaKnown RBP4.91□□□□□ -1.62
CD44-235ENST00000532339 UTP14CQ5TAP6 766 aaKnown RBP4.91□□□□□ -1.62
CD44-235ENST00000532339 PPP4R3AQ6IN85 833 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 NOL8Q76FK4 1167 aaKnown RBP4.91□□□□□ -1.62
CD44-235ENST00000532339 DEFB123Q8N688 67 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 IL17RDQ8NFM7 739 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 IFI44Q8TCB0 444 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 RAB24Q969Q5 203 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 FAXDC2Q96IV6 333 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 PACSIN1Q9BY11 444 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 SEMA4GQ9NTN9 838 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 RNF186Q9NXI6 227 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 JKAMPQ9P055 326 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 SLC17A6Q9P2U8 582 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.91□□□□□ -1.62
CD44-235ENST00000532339 HDAC9Q9UKV0 1011 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 CDYLQ9Y232 598 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 MRFAP1Q9Y605 127 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 C4AP0C0L4 1744 aa4.91□□□□□ -1.62
CD44-235ENST00000532339 UBR3Q6ZT12 1888 aa4.9□□□□□ -1.62
CD44-235ENST00000532339 CACNA1GO43497 2377 aa4.9□□□□□ -1.62
CD44-235ENST00000532339 PRAMEF33A0A0G2JMD5 474 aa4.9□□□□□ -1.63
CD44-235ENST00000532339 MGST3O14880 152 aa4.9□□□□□ -1.63
CD44-235ENST00000532339 XPOTO43592 962 aaKnown RBP4.9□□□□□ -1.63
CD44-235ENST00000532339 PRAMEF10O60809 474 aa4.9□□□□□ -1.63
CD44-235ENST00000532339 MT-CO1P00395 513 aa4.9□□□□□ -1.63
CD44-235ENST00000532339 SRGNP10124 158 aa4.9□□□□□ -1.63
CD44-235ENST00000532339 SLC6A4P31645 630 aa4.9□□□□□ -1.63
CD44-235ENST00000532339 RPS7P62081 194 aaKnown RBP4.9□□□□□ -1.63
CD44-235ENST00000532339 FPGSQ05932 587 aa4.9□□□□□ -1.63
CD44-235ENST00000532339 MCL1Q07820 350 aa4.9□□□□□ -1.63
CD44-235ENST00000532339 CCDC181Q5TID7 509 aa4.9□□□□□ -1.63
CD44-235ENST00000532339 SYDE2Q5VT97 1194 aa4.9□□□□□ -1.63
CD44-235ENST00000532339 ZKSCAN2Q63HK3 967 aa4.9□□□□□ -1.63
CD44-235ENST00000532339 GADL1Q6ZQY3 521 aa4.9□□□□□ -1.63
CD44-235ENST00000532339 ARHGEF25Q86VW2 580 aa4.9□□□□□ -1.63
CD44-235ENST00000532339 FMNL3Q8IVF7 1028 aa4.9□□□□□ -1.63
CD44-235ENST00000532339 AOPEPQ8N6M6 819 aa4.9□□□□□ -1.63
CD44-235ENST00000532339 TMEM125Q96AQ2 219 aa4.9□□□□□ -1.63
CD44-235ENST00000532339 MTMR8Q96EF0 704 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms