RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 PDGFRLQ15198 375 aa15.33■□□□□ 0.04
CPSF1-201ENST00000526271 CFAP221Q4G0U5 840 aa15.33■□□□□ 0.04
CPSF1-201ENST00000526271 L1TD1Q5T7N2 865 aaKnown RBP15.33■□□□□ 0.04
CPSF1-201ENST00000526271 CAMKK1Q8N5S9 505 aa15.33■□□□□ 0.04
CPSF1-201ENST00000526271 MRPS31Q92665 395 aaKnown RBP15.33■□□□□ 0.04
CPSF1-201ENST00000526271 MTMR12Q9C0I1 747 aa15.33■□□□□ 0.04
CPSF1-201ENST00000526271 PDE11AQ9HCR9 933 aa15.33■□□□□ 0.04
CPSF1-201ENST00000526271 ABCB6Q9NP58 842 aa15.33■□□□□ 0.04
CPSF1-201ENST00000526271 EBF1Q9UH73 591 aa15.33■□□□□ 0.04
CPSF1-201ENST00000526271 ZMYM5Q9UJ78 669 aa15.33■□□□□ 0.04
CPSF1-201ENST00000526271 PCDHGA5Q9Y5G8 931 aa15.33■□□□□ 0.04
CPSF1-201ENST00000526271 BAHCC1Q9P281 2608 aa15.32■□□□□ 0.04
CPSF1-201ENST00000526271 LNP1A1A4G5 178 aa15.32■□□□□ 0.04
CPSF1-201ENST00000526271 BCLAF3A2AJT9 711 aaKnown RBP15.32■□□□□ 0.04
CPSF1-201ENST00000526271 SOBPA7XYQ1 873 aa15.32■□□□□ 0.04
CPSF1-201ENST00000526271 H3BQV1 296 aa15.32■□□□□ 0.04
CPSF1-201ENST00000526271 IL18RAPO95256 599 aa15.32■□□□□ 0.04
CPSF1-201ENST00000526271 TCF3P15923 654 aa15.32■□□□□ 0.04
CPSF1-201ENST00000526271 DRD1P21728 446 aa15.32■□□□□ 0.04
CPSF1-201ENST00000526271 CACNA2D1P54289 1103 aa15.32■□□□□ 0.04
CPSF1-201ENST00000526271 PSMC1P62191 440 aaKnown RBP15.32■□□□□ 0.04
CPSF1-201ENST00000526271 TAF12Q16514 161 aa15.32■□□□□ 0.04
CPSF1-201ENST00000526271 NFE2Q16621 373 aaPredicted RBP15.32■□□□□ 0.04
CPSF1-201ENST00000526271 IL31Q6EBC2 164 aa15.32■□□□□ 0.04
CPSF1-201ENST00000526271 RASSF3Q86WH2 238 aa15.32■□□□□ 0.04
CPSF1-201ENST00000526271 NT5DC4Q86YG4 428 aa15.32■□□□□ 0.04
CPSF1-201ENST00000526271 FRMD1Q8N878 549 aa15.32■□□□□ 0.04
CPSF1-201ENST00000526271 SH3RF2Q8TEC5 729 aa15.32■□□□□ 0.04
CPSF1-201ENST00000526271 USP33Q8TEY7 942 aa15.32■□□□□ 0.04
CPSF1-201ENST00000526271 CD101Q93033 1021 aa15.32■□□□□ 0.04
CPSF1-201ENST00000526271 HVCN1Q96D96 273 aa15.32■□□□□ 0.04
CPSF1-201ENST00000526271 ZNF560Q96MR9 790 aa15.32■□□□□ 0.04
CPSF1-201ENST00000526271 GZF1Q9H116 711 aaPredicted RBP15.32■□□□□ 0.04
CPSF1-201ENST00000526271 TRPC7Q9HCX4 862 aa15.32■□□□□ 0.04
CPSF1-201ENST00000526271 DUS2Q9NX74 493 aaKnown RBP15.32■□□□□ 0.04
CPSF1-201ENST00000526271 ANGPTL2Q9UKU9 493 aa15.32■□□□□ 0.04
CPSF1-201ENST00000526271 SNX9Q9Y5X1 595 aa15.32■□□□□ 0.04
CPSF1-201ENST00000526271 CEP192Q8TEP8 1941 aa15.32■□□□□ 0.04
CPSF1-201ENST00000526271 ADAMTS9Q9P2N4 1935 aa15.32■□□□□ 0.04
CPSF1-201ENST00000526271 DSPP15924 2871 aaKnown RBP15.31■□□□□ 0.04
CPSF1-201ENST00000526271 ATRXP46100 2492 aa15.31■□□□□ 0.04
CPSF1-201ENST00000526271 CDX4O14627 284 aaPredicted RBP15.31■□□□□ 0.04
CPSF1-201ENST00000526271 SCAMP3O14828 347 aaKnown RBP15.31■□□□□ 0.04
CPSF1-201ENST00000526271 ATG13O75143 517 aa15.31■□□□□ 0.04
CPSF1-201ENST00000526271 PRPF6O94906 941 aaKnown RBP15.31■□□□□ 0.04
CPSF1-201ENST00000526271 TSPY1Q01534 308 aa15.31■□□□□ 0.04
CPSF1-201ENST00000526271 LARP1BQ659C4 914 aaKnown RBP15.31■□□□□ 0.04
CPSF1-201ENST00000526271 TMEM92Q6UXU6 159 aa15.31■□□□□ 0.04
CPSF1-201ENST00000526271 C12orf40Q86WS4 652 aa15.31■□□□□ 0.04
CPSF1-201ENST00000526271 ADGRF2Q8IZF7 708 aa15.31■□□□□ 0.04
CPSF1-201ENST00000526271 LRRC52Q8N7C0 313 aa15.31■□□□□ 0.04
CPSF1-201ENST00000526271 C12orf50Q8NA57 414 aaPredicted RBP15.31■□□□□ 0.04
CPSF1-201ENST00000526271 HPS3Q969F9 1004 aa15.31■□□□□ 0.04
CPSF1-201ENST00000526271 MYLPFQ96A32 169 aa15.31■□□□□ 0.04
CPSF1-201ENST00000526271 TPSD1Q9BZJ3 242 aa15.31■□□□□ 0.04
CPSF1-201ENST00000526271 RNF38Q9H0F5 515 aa15.31■□□□□ 0.04
CPSF1-201ENST00000526271 PCIF1Q9H4Z3 704 aa15.31■□□□□ 0.04
CPSF1-201ENST00000526271 TMEM206Q9H813 350 aa15.31■□□□□ 0.04
CPSF1-201ENST00000526271 VPS45Q9NRW7 570 aa15.31■□□□□ 0.04
CPSF1-201ENST00000526271 HCN2Q9UL51 889 aa15.31■□□□□ 0.04
CPSF1-201ENST00000526271 LAMA5O15230 3695 aa15.3■□□□□ 0.04
CPSF1-201ENST00000526271 C4orf47A7E2U8 309 aa15.3■□□□□ 0.04
CPSF1-201ENST00000526271 C1QTNF9BB2RNN3 333 aa15.3■□□□□ 0.04
CPSF1-201ENST00000526271 FOXD2O60548 495 aaPredicted RBP15.3■□□□□ 0.04
CPSF1-201ENST00000526271 APBB3O95704 486 aa15.3■□□□□ 0.04
CPSF1-201ENST00000526271 C1QTNF9P0C862 333 aa15.3■□□□□ 0.04
CPSF1-201ENST00000526271 SPINK2P20155 84 aa15.3■□□□□ 0.04
CPSF1-201ENST00000526271 RESTQ13127 1097 aa15.3■□□□□ 0.04
CPSF1-201ENST00000526271 PMS2CLQ68D20 193 aa15.3■□□□□ 0.04
CPSF1-201ENST00000526271 PSAPL1Q6NUJ1 521 aa15.3■□□□□ 0.04
CPSF1-201ENST00000526271 CPA6Q8N4T0 437 aa15.3■□□□□ 0.04
CPSF1-201ENST00000526271 CSGALNACT2Q8N6G5 542 aa15.3■□□□□ 0.04
CPSF1-201ENST00000526271 KRI1Q8N9T8 703 aaKnown RBP15.3■□□□□ 0.04
CPSF1-201ENST00000526271 MDGA1Q8NFP4 955 aa15.3■□□□□ 0.04
CPSF1-201ENST00000526271 EDEM2Q9BV94 578 aa15.3■□□□□ 0.04
CPSF1-201ENST00000526271 MRPL44Q9H9J2 332 aaKnown RBP15.3■□□□□ 0.04
CPSF1-201ENST00000526271 ZDHHC4Q9NPG8 344 aa15.3■□□□□ 0.04
CPSF1-201ENST00000526271 OLFML3Q9NRN5 406 aa15.3■□□□□ 0.04
CPSF1-201ENST00000526271 INTS13Q9NVM9 706 aa15.3■□□□□ 0.04
CPSF1-201ENST00000526271 RBAKQ9NYW8 714 aaPredicted RBP15.3■□□□□ 0.04
CPSF1-201ENST00000526271 ARHGAP26Q9UNA1 814 aa15.3■□□□□ 0.04
CPSF1-201ENST00000526271 PCDH15Q96QU1 1955 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 TRAV19A0A0A6YYK7 116 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 OLFM2O95897 454 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 CYP17A1P05093 508 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 USP17L7P0C7H9 530 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 GARTP22102 1010 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 PNPLA4P41247 253 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 MAGEA11P43364 429 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 SLC6A11P48066 632 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 RPL10AP62906 217 aaKnown RBP15.29■□□□□ 0.04
CPSF1-201ENST00000526271 CREB5Q02930 508 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 POSTNQ15063 836 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 FBXO43Q4G163 708 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 EMC10Q5UCC4 262 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 RNF43Q68DV7 783 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 CC2D1AQ6P1N0 951 aaPredicted RBP15.29■□□□□ 0.04
CPSF1-201ENST00000526271 BRAPQ7Z569 592 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 CBWD2Q8IUF1 395 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 SCN4BQ8IWT1 228 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms