RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 RAP1GAPP47736 663 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 SLC18A1P54219 525 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 EIF3EP60228 445 aaKnown RBP9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 PSMC1P62191 440 aaKnown RBP9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 CCDC142Q17RM4 750 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 KBTBD12Q3ZCT8 623 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 ANO7Q6IWH7 933 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 NPNTQ6UXI9 565 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 ZNF276Q8N554 614 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 NAT8LQ8N9F0 302 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 ACSS3Q9H6R3 686 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 ZNF302Q9NR11 478 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 CNTN6Q9UQ52 1028 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 LRRC42Q9Y546 428 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 UTRNP46939 3433 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 CCDC189A1A4V9 331 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 PYGBP11216 843 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 HMGCS2P54868 508 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 MMRN1Q13201 1228 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 FAXCQ5TGI0 409 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 ADGRD1Q6QNK2 874 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 KCTD6Q8NC69 237 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 SERAC1Q96JX3 654 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 COL11A2P13942 1736 aaPredicted RBP9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 MAFGO15525 162 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 KRT36O76013 467 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 MUM1Q2TAK8 710 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 MDH1BQ5I0G3 518 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 FKBP1CQ5VVH2 108 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 BANPQ8N9N5 519 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 MCUR1Q96AQ8 359 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 DDX56Q9NY93 547 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 POLIQ9UNA4 740 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 NFASCO94856 1347 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 DPPA5A6NC42 116 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 KDELR1P24390 212 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 NAMPTP43490 491 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 TGFB2P61812 414 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 PTK7Q13308 1070 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 KPNB1Q14974 876 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 RCN1Q15293 331 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 CTC1Q2NKJ3 1217 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 C4orf50Q6ZRC1 276 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 EEPD1Q7L9B9 569 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 CEP120Q8N960 986 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 DCAKDQ8WVC6 231 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 ZNF395Q9H8N7 513 aaPredicted RBP9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 ZFATQ9P243 1243 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 CYTH4Q9UIA0 394 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 OATP04181 439 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 ZNF132P52740 706 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 CAPSQ13938 189 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 KLHL38Q2WGJ6 581 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 SPATA18Q8TC71 538 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 DNAJC9Q8WXX5 260 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 TMEM120AQ9BXJ8 343 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 NIF3L1Q9GZT8 377 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 DHX33Q9H6R0 707 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 KAT6AQ92794 2004 aa9.69□□□□□ -0.86
LIMCH1-215ENST00000512632 FAM237BA0A1B0GVD1 139 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 C3orf70A6NLC5 250 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 KBTBD13C9JR72 458 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 INHBAP08476 426 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 ESRRAP11474 423 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 TUBP50607 506 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 CCNG1P51959 295 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 CNTN2Q02246 1040 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 RAB6CQ53S08 254 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 WASHC2DQ5SRD0 308 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 PPP1R15BQ5SWA1 713 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 NBPF12Q5TAG4 269 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 CIAPIN1Q6FI81 312 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 PCGF5Q86SE9 256 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 PPM1NQ8N819 430 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 PRPF31Q8WWY3 499 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 MECRQ9BV79 373 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 RAB6CQ9H0N0 254 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 GSC2O15499 205 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 CCDC22O60826 627 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 LUC7L3O95232 432 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 MYL2P10916 166 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 TMEM132BQ14DG7 1078 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 HADHQ16836 314 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 DUOXA2Q1HG44 320 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 TMEM132AQ24JP5 1023 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 ZNF699Q32M78 642 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 GNPTABQ3T906 1256 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 ACSBG2Q5FVE4 666 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 DARS2Q6PI48 645 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 BBS12Q6ZW61 710 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 PRPF39Q86UA1 669 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 TTLL6Q8N841 843 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 CFAP36Q96G28 342 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 NSL1Q96IY1 281 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 CYTH2Q99418 400 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 SLC13A1Q9BZW2 595 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 VPS11Q9H270 941 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 DCLRE1BQ9H816 532 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 MYOZ2Q9NPC6 264 aa9.68□□□□□ -0.86
LIMCH1-215ENST00000512632 TAS2R1Q9NYW7 299 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms