RNA–Protein interactions for RNA: ENST00000505998.5

NIPBL-205, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 5

Gene NIPBL, Length 969 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-205ENST00000505998 ATXN1LP0C7T5 689 aaKnown RBP6.94□□□□□ -1.3
NIPBL-205ENST00000505998 CYP2C9P11712 490 aa6.94□□□□□ -1.3
NIPBL-205ENST00000505998 XRCC6P12956 609 aaKnown RBP eCLIP6.94□□□□□ -1.3
NIPBL-205ENST00000505998 GATA3P23771 443 aa6.94□□□□□ -1.3
NIPBL-205ENST00000505998 FMO1Q01740 532 aa6.94□□□□□ -1.3
NIPBL-205ENST00000505998 SATB1Q01826 763 aa6.94□□□□□ -1.3
NIPBL-205ENST00000505998 TUBB3Q13509 450 aa6.94□□□□□ -1.3
NIPBL-205ENST00000505998 PJA1Q8NG27 643 aa6.94□□□□□ -1.3
NIPBL-205ENST00000505998 SSH3Q8TE77 659 aa6.94□□□□□ -1.3
NIPBL-205ENST00000505998 ZNF518BQ9C0D4 1074 aa6.94□□□□□ -1.3
NIPBL-205ENST00000505998 AFF4Q9UHB7 1163 aaKnown RBP6.94□□□□□ -1.3
NIPBL-205ENST00000505998 DMTF1Q9Y222 760 aa6.94□□□□□ -1.3
NIPBL-205ENST00000505998 VWDEQ8N2E2 1590 aa6.94□□□□□ -1.3
NIPBL-205ENST00000505998 PRDM15P57071 1507 aaPredicted RBP6.93□□□□□ -1.3
NIPBL-205ENST00000505998 TMEM191CA6NGB0 347 aa6.93□□□□□ -1.3
NIPBL-205ENST00000505998 DCLK1O15075 740 aa6.93□□□□□ -1.3
NIPBL-205ENST00000505998 RPL17P18621 184 aaKnown RBP6.93□□□□□ -1.3
NIPBL-205ENST00000505998 AVPR1BP47901 424 aa6.93□□□□□ -1.3
NIPBL-205ENST00000505998 LOXL3P58215 753 aa6.93□□□□□ -1.3
NIPBL-205ENST00000505998 SF3B3Q15393 1217 aaKnown RBP6.93□□□□□ -1.3
NIPBL-205ENST00000505998 TMEM108Q6UXF1 575 aa6.93□□□□□ -1.3
NIPBL-205ENST00000505998 ZNF627Q7L945 461 aa6.93□□□□□ -1.3
NIPBL-205ENST00000505998 VRK3Q8IV63 474 aa6.93□□□□□ -1.3
NIPBL-205ENST00000505998 ULK2Q8IYT8 1036 aa6.93□□□□□ -1.3
NIPBL-205ENST00000505998 MAML1Q92585 1016 aa6.93□□□□□ -1.3
NIPBL-205ENST00000505998 Q96MF0 132 aa6.93□□□□□ -1.3
NIPBL-205ENST00000505998 BTBD1Q9H0C5 482 aa6.93□□□□□ -1.3
NIPBL-205ENST00000505998 ARNT2Q9HBZ2 717 aa6.93□□□□□ -1.3
NIPBL-205ENST00000505998 STK32BQ9NY57 414 aa6.93□□□□□ -1.3
NIPBL-205ENST00000505998 CFDP1Q9UEE9 299 aaPredicted RBP6.93□□□□□ -1.3
NIPBL-205ENST00000505998 SHOC2Q9UQ13 582 aa6.93□□□□□ -1.3
NIPBL-205ENST00000505998 SNX13Q9Y5W8 968 aa6.93□□□□□ -1.3
NIPBL-205ENST00000505998 ZC3H13Q5T200 1668 aaKnown RBP6.93□□□□□ -1.3
NIPBL-205ENST00000505998 NCOA1Q15788 1441 aa6.93□□□□□ -1.3
NIPBL-205ENST00000505998 C9orf84Q5VXU9 1444 aa6.93□□□□□ -1.3
NIPBL-205ENST00000505998 KDM5DQ9BY66 1539 aa6.92□□□□□ -1.3
NIPBL-205ENST00000505998 DUOX2Q9NRD8 1548 aa6.92□□□□□ -1.3
NIPBL-205ENST00000505998 TRIM43BA6NCK2 446 aa6.92□□□□□ -1.3
NIPBL-205ENST00000505998 APAF1O14727 1248 aa6.92□□□□□ -1.3
NIPBL-205ENST00000505998 NBPF7P0C2Y1 421 aaPredicted RBP6.92□□□□□ -1.3
NIPBL-205ENST00000505998 HKR1P10072 659 aa6.92□□□□□ -1.3
NIPBL-205ENST00000505998 SRGNP10124 158 aa6.92□□□□□ -1.3
NIPBL-205ENST00000505998 PHKG2P15735 406 aa6.92□□□□□ -1.3
NIPBL-205ENST00000505998 CD6P30203 668 aa6.92□□□□□ -1.3
NIPBL-205ENST00000505998 ACVRL1P37023 503 aa6.92□□□□□ -1.3
NIPBL-205ENST00000505998 ZNF134P52741 427 aa6.92□□□□□ -1.3
NIPBL-205ENST00000505998 WNT3P56703 355 aa6.92□□□□□ -1.3
NIPBL-205ENST00000505998 TAP1Q03518 808 aa6.92□□□□□ -1.3
NIPBL-205ENST00000505998 KRT78Q8N1N4 520 aa6.92□□□□□ -1.3
NIPBL-205ENST00000505998 LNX2Q8N448 690 aa6.92□□□□□ -1.3
NIPBL-205ENST00000505998 SUPT20HQ8NEM7 779 aa6.92□□□□□ -1.3
NIPBL-205ENST00000505998 SLC30A5Q8TAD4 765 aa6.92□□□□□ -1.3
NIPBL-205ENST00000505998 CAVIN3Q969G5 261 aa6.92□□□□□ -1.3
NIPBL-205ENST00000505998 TRIM43Q96BQ3 446 aaPredicted RBP6.92□□□□□ -1.3
NIPBL-205ENST00000505998 NMD3Q96D46 503 aaKnown RBP6.92□□□□□ -1.3
NIPBL-205ENST00000505998 OSBPL9Q96SU4 736 aa6.92□□□□□ -1.3
NIPBL-205ENST00000505998 MS4A7Q9GZW8 240 aaPredicted RBP6.92□□□□□ -1.3
NIPBL-205ENST00000505998 A1CFQ9NQ94 594 aaKnown RBP6.92□□□□□ -1.3
NIPBL-205ENST00000505998 COL4A3Q01955 1670 aa6.92□□□□□ -1.3
NIPBL-205ENST00000505998 HFM1A2PYH4 1435 aa6.92□□□□□ -1.3
NIPBL-205ENST00000505998 ERBINQ96RT1 1412 aa6.92□□□□□ -1.3
NIPBL-205ENST00000505998 MROH2AA6NES4 1674 aa6.91□□□□□ -1.3
NIPBL-205ENST00000505998 TMEM233B4DJY2 109 aa6.91□□□□□ -1.3
NIPBL-205ENST00000505998 PMM2O15305 246 aa6.91□□□□□ -1.3
NIPBL-205ENST00000505998 PXNP49023 591 aaPredicted RBP6.91□□□□□ -1.3
NIPBL-205ENST00000505998 LILRA4P59901 499 aa6.91□□□□□ -1.3
NIPBL-205ENST00000505998 C3orf38Q5JPI3 329 aa6.91□□□□□ -1.3
NIPBL-205ENST00000505998 RBM20Q5T481 1227 aaKnown RBP6.91□□□□□ -1.3
NIPBL-205ENST00000505998 Q6YL49 198 aa6.91□□□□□ -1.3
NIPBL-205ENST00000505998 SESTD1Q86VW0 696 aa6.91□□□□□ -1.3
NIPBL-205ENST00000505998 SLC44A3Q8N4M1 653 aa6.91□□□□□ -1.3
NIPBL-205ENST00000505998 B3GALNT2Q8NCR0 500 aa6.91□□□□□ -1.3
NIPBL-205ENST00000505998 COQ10AQ96MF6 247 aa6.91□□□□□ -1.3
NIPBL-205ENST00000505998 PRRX2Q99811 253 aa6.91□□□□□ -1.3
NIPBL-205ENST00000505998 AIFM2Q9BRQ8 373 aa6.91□□□□□ -1.3
NIPBL-205ENST00000505998 TPSD1Q9BZJ3 242 aa6.91□□□□□ -1.3
NIPBL-205ENST00000505998 ZSCAN32Q9NX65 697 aa6.91□□□□□ -1.3
NIPBL-205ENST00000505998 KCTD5Q9NXV2 234 aa6.91□□□□□ -1.3
NIPBL-205ENST00000505998 ZNF644Q9H582 1327 aaPredicted RBP6.91□□□□□ -1.3
NIPBL-205ENST00000505998 POLR2AP24928 1970 aaKnown RBP6.9□□□□□ -1.3
NIPBL-205ENST00000505998 RHPN2P1A8MT19 583 aa6.9□□□□□ -1.3
NIPBL-205ENST00000505998 FOXN3O00409 490 aaPredicted RBP6.9□□□□□ -1.3
NIPBL-205ENST00000505998 PPP3CBP16298 524 aa6.9□□□□□ -1.3
NIPBL-205ENST00000505998 RPS16P62249 146 aaKnown RBP6.9□□□□□ -1.3
NIPBL-205ENST00000505998 FHL2Q14192 279 aa6.9□□□□□ -1.3
NIPBL-205ENST00000505998 DCAF12L1Q5VU92 463 aa6.9□□□□□ -1.3
NIPBL-205ENST00000505998 SFRP4Q6FHJ7 346 aaPredicted RBP6.9□□□□□ -1.3
NIPBL-205ENST00000505998 MICU3Q86XE3 530 aa6.9□□□□□ -1.3
NIPBL-205ENST00000505998 CCDC146Q8IYE0 955 aa6.9□□□□□ -1.3
NIPBL-205ENST00000505998 TOR1AIP2Q8NFQ8 470 aa6.9□□□□□ -1.3
NIPBL-205ENST00000505998 RAPGEF4Q8WZA2 1011 aa6.9□□□□□ -1.3
NIPBL-205ENST00000505998 LPIN2Q92539 896 aa6.9□□□□□ -1.3
NIPBL-205ENST00000505998 PHKBQ93100 1093 aa6.9□□□□□ -1.3
NIPBL-205ENST00000505998 NELL2Q99435 816 aa6.9□□□□□ -1.3
NIPBL-205ENST00000505998 SCAND2PQ9GZW5 306 aaPredicted RBP6.9□□□□□ -1.3
NIPBL-205ENST00000505998 COL20A1Q9P218 1284 aa6.9□□□□□ -1.3
NIPBL-205ENST00000505998 CORO2BQ9UQ03 480 aa6.9□□□□□ -1.3
NIPBL-205ENST00000505998 YEATS2Q9ULM3 1422 aa6.9□□□□□ -1.31
NIPBL-205ENST00000505998 IQGAP3Q86VI3 1631 aa6.9□□□□□ -1.31
NIPBL-205ENST00000505998 ADAMTSL3P82987 1691 aa6.9□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms