RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 HOMER3Q9NSC5 361 aa13.08□□□□□ -0.32
HMGN1-220ENST00000492280 TPX2Q9ULW0 747 aaKnown RBP13.08□□□□□ -0.32
HMGN1-220ENST00000492280 PCDHGC3Q9UN70 934 aa13.08□□□□□ -0.32
HMGN1-220ENST00000492280 NR2E3Q9Y5X4 410 aa13.08□□□□□ -0.32
HMGN1-220ENST00000492280 PLXNA1Q9UIW2 1896 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 CILPO75339 1184 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 TFE3P19532 575 aaPredicted RBP13.07□□□□□ -0.32
HMGN1-220ENST00000492280 KDELR1P24390 212 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 FOXN2P32314 431 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 STX2P32856 288 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 AP3M2P53677 418 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 ATXN1P54253 815 aaKnown RBP13.07□□□□□ -0.32
HMGN1-220ENST00000492280 PIGHQ14442 188 aaPredicted RBP13.07□□□□□ -0.32
HMGN1-220ENST00000492280 SMAD1Q15797 465 aaKnown RBP13.07□□□□□ -0.32
HMGN1-220ENST00000492280 OR6B2Q6IFH4 312 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 CGB2Q6NT52 195 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 TAPT1Q6NXT6 567 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 SCYL2Q6P3W7 929 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 C1orf228Q6PIY5 440 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 CENPTQ96BT3 561 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 ADPGKQ9BRR6 497 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 BCO2Q9BYV7 579 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 CD248Q9HCU0 757 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 SLCO1B3Q9NPD5 702 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.07□□□□□ -0.32
HMGN1-220ENST00000492280 TSPAN16Q9UKR8 245 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 GRID1Q9ULK0 1009 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 NME7Q9Y5B8 376 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 KRT15P19012 456 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 PHKA2P46019 1235 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 YWHAEP62258 255 aaKnown RBP13.07□□□□□ -0.32
HMGN1-220ENST00000492280 TMEM132DQ14C87 1099 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 MAMDC4Q6UXC1 1216 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 FAM183BPQ6ZVS7 135 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 ACOT1Q86TX2 421 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 CNPY4Q8N129 248 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 PRCCQ92733 491 aaPredicted RBP13.07□□□□□ -0.32
HMGN1-220ENST00000492280 KIF12Q96FN5 646 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 TMEM176AQ96HP8 235 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 RMDN2Q96LZ7 410 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 STMN4Q9H169 189 aaPredicted RBP13.07□□□□□ -0.32
HMGN1-220ENST00000492280 CDHR5Q9HBB8 845 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 TUBGCP4Q9UGJ1 667 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 GJD2Q9UKL4 321 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 PNMA3Q9UL41 463 aa13.07□□□□□ -0.32
HMGN1-220ENST00000492280 SIGLEC16A6NMB1 481 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 SRRM3A6NNA2 597 aaPredicted RBP13.06□□□□□ -0.32
HMGN1-220ENST00000492280 CDH16O75309 829 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 AVILO75366 819 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 CDH5P33151 784 aaPredicted RBP13.06□□□□□ -0.32
HMGN1-220ENST00000492280 GPD2P43304 727 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 WDR4P57081 412 aaKnown RBP13.06□□□□□ -0.32
HMGN1-220ENST00000492280 GPX6P59796 221 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 BBS9Q3SYG4 887 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 ZC3H12AQ5D1E8 599 aaKnown RBP13.06□□□□□ -0.32
HMGN1-220ENST00000492280 YTHDF3Q7Z739 585 aaKnown RBP13.06□□□□□ -0.32
HMGN1-220ENST00000492280 PIGWQ7Z7B1 504 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 SPATS2Q86XZ4 545 aaKnown RBP13.06□□□□□ -0.32
HMGN1-220ENST00000492280 SLC35B2Q8TB61 432 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 CLEC4CQ8WTT0 213 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 CPT1BQ92523 772 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 KCNN1Q92952 543 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 C18orf25Q96B23 403 aaPredicted RBP13.06□□□□□ -0.32
HMGN1-220ENST00000492280 ZMAT2Q96NC0 199 aaKnown RBP13.06□□□□□ -0.32
HMGN1-220ENST00000492280 TRIM56Q9BRZ2 755 aaKnown RBP13.06□□□□□ -0.32
HMGN1-220ENST00000492280 EIF2AQ9BY44 585 aaKnown RBP13.06□□□□□ -0.32
HMGN1-220ENST00000492280 MIS12Q9H081 205 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 SPON1Q9HCB6 807 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 NGRNQ9NPE2 291 aaKnown RBP13.06□□□□□ -0.32
HMGN1-220ENST00000492280 SETD4Q9NVD3 440 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 USP18Q9UMW8 372 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.06□□□□□ -0.32
HMGN1-220ENST00000492280 KCNH4Q9UQ05 1017 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 CHMP2BQ9UQN3 213 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 SNX9Q9Y5X1 595 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 CLUHO75153 1309 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 WDR91A4D1P6 747 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 CCT8L1PA6NM43 557 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 UBOX5O94941 541 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 RPL22P35268 128 aaKnown RBP13.06□□□□□ -0.32
HMGN1-220ENST00000492280 CDH6P55285 790 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 DNAJC3Q13217 504 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 GRM1Q13255 1194 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 PPIL2Q13356 520 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 PRAMEF19Q5SWL8 479 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 SESTD1Q86VW0 696 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 KIF2BQ8N4N8 673 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 MRPL45Q9BRJ2 306 aaKnown RBP13.06□□□□□ -0.32
HMGN1-220ENST00000492280 ALG13Q9NP73 1137 aaKnown RBP13.06□□□□□ -0.32
HMGN1-220ENST00000492280 PRMT7Q9NVM4 692 aaPredicted RBP13.06□□□□□ -0.32
HMGN1-220ENST00000492280 SNTG2Q9NY99 539 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.06□□□□□ -0.32
HMGN1-220ENST00000492280 TRIM33Q9UPN9 1127 aa13.06□□□□□ -0.32
HMGN1-220ENST00000492280 ATXN2Q99700 1313 aaKnown RBP13.06□□□□□ -0.32
HMGN1-220ENST00000492280 CXCL11O14625 94 aa13.05□□□□□ -0.32
HMGN1-220ENST00000492280 SNX3O60493 162 aa13.05□□□□□ -0.32
HMGN1-220ENST00000492280 TSPAN1O60635 241 aa13.05□□□□□ -0.32
HMGN1-220ENST00000492280 NPTXRO95502 500 aa13.05□□□□□ -0.32
HMGN1-220ENST00000492280 OSBPP22059 807 aa13.05□□□□□ -0.32
HMGN1-220ENST00000492280 CAV1Q03135 178 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms