RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 HPS4Q9NQG7 708 aa15.36■□□□□ 0.05
SNRNP40-203ENST00000463988 RBM12Q9NTZ6 932 aaKnown RBP15.36■□□□□ 0.05
SNRNP40-203ENST00000463988 EHD2Q9NZN4 543 aa15.36■□□□□ 0.05
SNRNP40-203ENST00000463988 DCHS1Q96JQ0 3298 aa15.36■□□□□ 0.05
SNRNP40-203ENST00000463988 TRAV19A0A0A6YYK7 116 aa15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 TRDMT1O14717 391 aaKnown RBP15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 ATP2C2O75185 946 aa15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 CST3P01034 146 aaPredicted RBP15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 USP17L7P0C7H9 530 aa15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 PFKLP17858 780 aa15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 CASP1P29466 404 aa15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 ATICP31939 592 aa15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 CNR2P34972 360 aa15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 GNL1P36915 607 aaPredicted RBP15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 AFMP43652 599 aa15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 PDE6CP51160 858 aa15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 DNM1Q05193 864 aaKnown RBP15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 Q6ZS52 159 aa15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 STKLD1Q8NE28 680 aa15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 MYLPFQ96A32 169 aa15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 RMDN1Q96DB5 314 aa15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 GZF1Q9H116 711 aaPredicted RBP15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 SNX25Q9H3E2 840 aa15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 SLC39A2Q9NP94 309 aa15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 GCNT4Q9P109 453 aa15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 USP25Q9UHP3 1055 aa15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 OBSL1O75147 1896 aa15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 ZNF638Q14966 1978 aaKnown RBP15.35■□□□□ 0.05
SNRNP40-203ENST00000463988 K7ESF4 209 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 TRIM66O15016 1216 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 ACTN4O43707 911 aaKnown RBP15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 EXOC3O60645 756 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 PDGFRBP09619 1106 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 TCF3P15923 654 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 BDNFP23560 247 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 AP3M2P53677 418 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 PSMC1P62191 440 aaKnown RBP15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 TNNC1P63316 161 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 CLDN10P78369 228 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 GRSF1Q12849 480 aaKnown RBP eCLIP15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 PSMD2Q13200 908 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 TRPC3Q13507 836 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 PKP1Q13835 747 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 PUM1Q14671 1186 aaKnown RBP eCLIP15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 ZNF77Q15935 545 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 WDR72Q3MJ13 1102 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 TMEM196Q5HYL7 178 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 LAIR1Q6GTX8 287 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 LONP2Q86WA8 852 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 SLC9A9Q8IVB4 645 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 ZNF516Q92618 1163 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 SYAP1Q96A49 352 aaPredicted RBP15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 EXOC4Q96A65 974 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 PCED1BQ96HM7 432 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 C8orf48Q96LL4 319 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 TTLL2Q9BWV7 592 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 EBF3Q9H4W6 596 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 VRTNQ9H8Y1 702 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 GMEB2Q9UKD1 530 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 RAB23Q9ULC3 237 aa15.34■□□□□ 0.05
SNRNP40-203ENST00000463988 OTOL1A6NHN0 477 aaPredicted RBP15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 KLRC4O43908 158 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 ATG13O75143 517 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 MYL1P05976 194 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 CKMP06732 381 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 SDHBP21912 280 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 CMA1P23946 247 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 ANXA13P27216 316 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 GRIK1P39086 918 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 PPP3CCP48454 512 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 NOP14P78316 857 aaKnown RBP15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 CYP27A1Q02318 531 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 USP4Q13107 963 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 MTF1Q14872 753 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 TRIM68Q6AZZ1 485 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 DENND5BQ6ZUT9 1274 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 CPA6Q8N4T0 437 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 KIAA1958Q8N8K9 716 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 RIN3Q8TB24 985 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 OSCP1Q8WVF1 389 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 CHFRQ96EP1 664 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 PAGE5Q96GU1 130 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 SLC22A12Q96S37 553 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 CYP2S1Q96SQ9 504 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 MRPL45Q9BRJ2 306 aaKnown RBP15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 XYLT2Q9H1B5 865 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 TRPC7Q9HCX4 862 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 DMAC2Q9NW81 257 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 DLL3Q9NYJ7 618 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 SERTAD1Q9UHV2 236 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 ARHGAP26Q9UNA1 814 aa15.33■□□□□ 0.04
SNRNP40-203ENST00000463988 CHURC1-FNTBB4DL54 471 aa15.32■□□□□ 0.04
SNRNP40-203ENST00000463988 LRP3O75074 770 aa15.32■□□□□ 0.04
SNRNP40-203ENST00000463988 ARSAP15289 507 aa15.32■□□□□ 0.04
SNRNP40-203ENST00000463988 PTPN1P18031 435 aaKnown RBP15.32■□□□□ 0.04
SNRNP40-203ENST00000463988 HDCP19113 662 aa15.32■□□□□ 0.04
SNRNP40-203ENST00000463988 DRD1P21728 446 aa15.32■□□□□ 0.04
SNRNP40-203ENST00000463988 FNTBP49356 437 aa15.32■□□□□ 0.04
SNRNP40-203ENST00000463988 MYL6P60660 151 aa15.32■□□□□ 0.04
SNRNP40-203ENST00000463988 STK4Q13043 487 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms