RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 MAGI3Q5TCQ9 1506 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 TRDMT1O14717 391 aaKnown RBP6.32□□□□□ -1.4
SCN1A-203ENST00000409050 RAD51CO43502 376 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 SLC4A1P02730 911 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 ABCB1P08183 1280 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-203ENST00000409050 PRR29P0C7W0 189 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 IMPDH2P12268 514 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 FGFR4P22455 802 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 SERPINH1P50454 418 aaKnown RBP6.32□□□□□ -1.4
SCN1A-203ENST00000409050 PRKG1Q13976 671 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 SCARA3Q6AZY7 606 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 PTRHD1Q6GMV3 140 aaKnown RBP6.32□□□□□ -1.4
SCN1A-203ENST00000409050 HDDC2Q7Z4H3 204 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 LDHDQ86WU2 507 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 TPCN2Q8NHX9 752 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 AFG1LQ8WV93 481 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 CYGBQ8WWM9 190 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 REPS1Q96D71 796 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 MS4A14Q96JA4 679 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 SPATA33Q96N06 139 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 C17orf80Q9BSJ5 609 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 PIGUQ9H490 435 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 PAPOLBQ9NRJ5 636 aaKnown RBP6.32□□□□□ -1.4
SCN1A-203ENST00000409050 TRMT6Q9UJA5 497 aaKnown RBP6.32□□□□□ -1.4
SCN1A-203ENST00000409050 ABCC3O15438 1527 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 CCDC195A0A1B0GUA6 201 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 CLRN2A0PK11 232 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 ERI2A8K979 691 aaKnown RBP6.32□□□□□ -1.4
SCN1A-203ENST00000409050 APRTP07741 180 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 ALADP13716 330 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 BRD2P25440 801 aaKnown RBP6.32□□□□□ -1.4
SCN1A-203ENST00000409050 HOXA13P31271 388 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-203ENST00000409050 HNRNPH1P31943 449 aaKnown RBP6.32□□□□□ -1.4
SCN1A-203ENST00000409050 ITGA8P53708 1063 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 SKP1P63208 163 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 UBXN2AP68543 259 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 ARMC3Q5W041 872 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 POTEGQ6S5H5 508 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 CRELD2Q6UXH1 353 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-203ENST00000409050 YAF2Q8IY57 180 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 B4GALNT2Q8NHY0 566 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 MYCBPAPQ8TBZ2 947 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 KCNV2Q8TDN2 545 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 UGT2B28Q9BY64 529 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 CLEC4MQ9H2X3 399 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-203ENST00000409050 WDR41Q9HAD4 459 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 PCDH9Q9HC56 1237 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 KLHL28Q9NXS3 571 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 TRHDEQ9UKU6 1024 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 SPATA31A3Q5VYP0 1347 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 TNS3Q68CZ2 1445 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 TMEM114B3SHH9 223 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 NCK2O43639 380 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 RPS6KA5O75582 802 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 CRTAMO95727 393 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 IGKV5-2P06315 115 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 CYP11B2P19099 503 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 NR2C2P49116 596 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 ARPP19P56211 112 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 PPP4CP60510 307 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 PREPLQ4J6C6 727 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-203ENST00000409050 SEL1L3Q68CR1 1132 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 SPATA18Q8TC71 538 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 HES6Q96HZ4 224 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 TINF2Q9BSI4 451 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 ATAD3AQ9NVI7 634 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 ATXN2Q99700 1313 aaKnown RBP6.32□□□□□ -1.4
SCN1A-203ENST00000409050 FAM58BPP0C7Q3 252 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 MSH3P20585 1137 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 CRABP2P29373 138 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 CDC25AP30304 524 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 NPY2RP49146 381 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 OSTNP61366 133 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 CDK16Q00536 496 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 C1QBPQ07021 282 aaKnown RBP6.32□□□□□ -1.4
SCN1A-203ENST00000409050 ELAVL2Q12926 359 aaKnown RBP6.32□□□□□ -1.4
SCN1A-203ENST00000409050 GSTA3Q16772 222 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 TTC27Q6P3X3 843 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 RIN2Q8WYP3 895 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-203ENST00000409050 PGM2Q96G03 612 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 AGBL1Q96MI9 1066 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 MXRA8Q9BRK3 442 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 C9orf16Q9BUW7 83 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 NRDE2Q9H7Z3 1164 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 CYP39A1Q9NYL5 469 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.32□□□□□ -1.4
SCN1A-203ENST00000409050 ZC3H4Q9UPT8 1303 aaKnown RBP6.32□□□□□ -1.4
SCN1A-203ENST00000409050 USP32Q8NFA0 1604 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.32□□□□□ -1.4
SCN1A-203ENST00000409050 SUPT3HB4E1H0 165 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 F8W810 466 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 UBXN8O00124 270 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 ANXA6P08133 673 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 COMTP21964 271 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 TAF6P49848 677 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 RAB15P59190 212 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 R3HDM1Q15032 1099 aaKnown RBP6.32□□□□□ -1.4
SCN1A-203ENST00000409050 INAQ16352 499 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 GPR162Q16538 588 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 ARHGAP15Q53QZ3 475 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms