RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 KRT82Q9NSB4 513 aa23.51■■□□□ 1.35
SHMT1-203ENST00000354098 KIAA1257Q9ULG3 409 aa23.51■■□□□ 1.35
SHMT1-203ENST00000354098 DAAM1Q9Y4D1 1078 aa23.51■■□□□ 1.35
SHMT1-203ENST00000354098 BRWD1Q9NSI6 2320 aa23.5■■□□□ 1.35
SHMT1-203ENST00000354098 HNRNPA1P09651 372 aaKnown RBP eCLIP23.5■■□□□ 1.35
SHMT1-203ENST00000354098 HOXA9P31269 272 aa23.5■■□□□ 1.35
SHMT1-203ENST00000354098 TFF2Q03403 129 aa23.5■■□□□ 1.35
SHMT1-203ENST00000354098 VSTM1Q6UX27 236 aa23.5■■□□□ 1.35
SHMT1-203ENST00000354098 SLC47A2Q86VL8 602 aa23.5■■□□□ 1.35
SHMT1-203ENST00000354098 CMASQ8NFW8 434 aaPredicted RBP23.5■■□□□ 1.35
SHMT1-203ENST00000354098 SMARCD1Q96GM5 515 aa23.5■■□□□ 1.35
SHMT1-203ENST00000354098 SMOQ99835 787 aa23.5■■□□□ 1.35
SHMT1-203ENST00000354098 CD207Q9UJ71 328 aa23.5■■□□□ 1.35
SHMT1-203ENST00000354098 F8VP50 259 aa23.49■■□□□ 1.35
SHMT1-203ENST00000354098 O00370 1275 aa23.49■■□□□ 1.35
SHMT1-203ENST00000354098 AP1G2O75843 785 aa23.49■■□□□ 1.35
SHMT1-203ENST00000354098 PAPLNO95428 1278 aa23.49■■□□□ 1.35
SHMT1-203ENST00000354098 GNA15P30679 374 aa23.49■■□□□ 1.35
SHMT1-203ENST00000354098 SMRP1Q8NCR6 262 aa23.49■■□□□ 1.35
SHMT1-203ENST00000354098 ZMIZ2Q8NF64 920 aa23.49■■□□□ 1.35
SHMT1-203ENST00000354098 BAP1Q92560 729 aa23.49■■□□□ 1.35
SHMT1-203ENST00000354098 ADAM7Q9H2U9 754 aa23.49■■□□□ 1.35
SHMT1-203ENST00000354098 HCFC1R1Q9NWW0 138 aa23.49■■□□□ 1.35
SHMT1-203ENST00000354098 TSPAN16Q9UKR8 245 aa23.49■■□□□ 1.35
SHMT1-203ENST00000354098 COG5Q9UP83 839 aa23.49■■□□□ 1.35
SHMT1-203ENST00000354098 PTPRDP23468 1912 aa23.48■■□□□ 1.35
SHMT1-203ENST00000354098 ATP8B3O60423 1300 aa23.48■■□□□ 1.35
SHMT1-203ENST00000354098 GFPT2O94808 682 aa23.48■■□□□ 1.35
SHMT1-203ENST00000354098 SOX5P35711 763 aa23.48■■□□□ 1.35
SHMT1-203ENST00000354098 MAP3K7CLP57077 242 aa23.48■■□□□ 1.35
SHMT1-203ENST00000354098 GOLGA7BQ2TAP0 167 aa23.48■■□□□ 1.35
SHMT1-203ENST00000354098 GPR149Q86SP6 731 aa23.48■■□□□ 1.35
SHMT1-203ENST00000354098 TTC30AQ86WT1 665 aa23.48■■□□□ 1.35
SHMT1-203ENST00000354098 ZNF606Q8WXB4 792 aa23.48■■□□□ 1.35
SHMT1-203ENST00000354098 SMG7Q92540 1137 aaKnown RBP23.48■■□□□ 1.35
SHMT1-203ENST00000354098 CFHP08603 1231 aa23.48■■□□□ 1.35
SHMT1-203ENST00000354098 FAM200BP0CF97 657 aa23.48■■□□□ 1.35
SHMT1-203ENST00000354098 STAT1P42224 750 aa23.48■■□□□ 1.35
SHMT1-203ENST00000354098 EPHB3P54753 998 aa23.48■■□□□ 1.35
SHMT1-203ENST00000354098 RPL10AP62906 217 aaKnown RBP23.48■■□□□ 1.35
SHMT1-203ENST00000354098 PTK2Q05397 1052 aa23.48■■□□□ 1.35
SHMT1-203ENST00000354098 MTMR3Q13615 1198 aa23.48■■□□□ 1.35
SHMT1-203ENST00000354098 CNGA2Q16280 664 aa23.48■■□□□ 1.35
SHMT1-203ENST00000354098 FIGNQ5HY92 759 aa23.48■■□□□ 1.35
SHMT1-203ENST00000354098 CLEC20AQ6ZU45 233 aa23.48■■□□□ 1.35
SHMT1-203ENST00000354098 VSTM4Q8IW00 320 aa23.48■■□□□ 1.35
SHMT1-203ENST00000354098 UBA3Q8TBC4 463 aa23.48■■□□□ 1.35
SHMT1-203ENST00000354098 CPLX3Q8WVH0 158 aa23.48■■□□□ 1.35
SHMT1-203ENST00000354098 DUSP16Q9BY84 665 aa23.48■■□□□ 1.35
SHMT1-203ENST00000354098 CSNK1G1Q9HCP0 422 aa23.48■■□□□ 1.35
SHMT1-203ENST00000354098 WDR3Q9UNX4 943 aaKnown RBP eCLIP23.48■■□□□ 1.35
SHMT1-203ENST00000354098 THAP12O43422 761 aa23.47■■□□□ 1.35
SHMT1-203ENST00000354098 ITIH3Q06033 890 aa23.47■■□□□ 1.35
SHMT1-203ENST00000354098 PLD1Q13393 1074 aa23.47■■□□□ 1.35
SHMT1-203ENST00000354098 LCLAT1Q6UWP7 414 aa23.47■■□□□ 1.35
SHMT1-203ENST00000354098 ANKRD52Q8NB46 1076 aa23.47■■□□□ 1.35
SHMT1-203ENST00000354098 C8orf48Q96LL4 319 aa23.47■■□□□ 1.35
SHMT1-203ENST00000354098 NUP58Q9BVL2 599 aa23.47■■□□□ 1.35
SHMT1-203ENST00000354098 PIDD1Q9HB75 910 aa23.47■■□□□ 1.35
SHMT1-203ENST00000354098 DMAP1Q9NPF5 467 aaPredicted RBP23.47■■□□□ 1.35
SHMT1-203ENST00000354098 DNMT3BQ9UBC3 853 aaKnown RBP23.47■■□□□ 1.35
SHMT1-203ENST00000354098 ITIH6Q6UXX5 1313 aa23.46■■□□□ 1.35
SHMT1-203ENST00000354098 GRXCR2A6NFK2 248 aa23.46■■□□□ 1.35
SHMT1-203ENST00000354098 TRIM66O15016 1216 aa23.46■■□□□ 1.35
SHMT1-203ENST00000354098 XYLBO75191 536 aa23.46■■□□□ 1.35
SHMT1-203ENST00000354098 ZNF75DP51815 510 aa23.46■■□□□ 1.35
SHMT1-203ENST00000354098 ARID5AQ03989 594 aa23.46■■□□□ 1.35
SHMT1-203ENST00000354098 SPECC1LQ69YQ0 1117 aa23.46■■□□□ 1.35
SHMT1-203ENST00000354098 SMYD5Q6GMV2 418 aa23.46■■□□□ 1.35
SHMT1-203ENST00000354098 CES5AQ6NT32 575 aa23.46■■□□□ 1.35
SHMT1-203ENST00000354098 GRASPQ7Z6J2 395 aaPredicted RBP23.46■■□□□ 1.35
SHMT1-203ENST00000354098 DNAJB7Q7Z6W7 309 aaPredicted RBP23.46■■□□□ 1.35
SHMT1-203ENST00000354098 GADD45GIP1Q8TAE8 222 aaPredicted RBP23.46■■□□□ 1.35
SHMT1-203ENST00000354098 ZNF512Q96ME7 567 aaPredicted RBP23.46■■□□□ 1.35
SHMT1-203ENST00000354098 LRRC53A6NM62 1247 aa23.45■■□□□ 1.34
SHMT1-203ENST00000354098 TULP2O00295 520 aa23.45■■□□□ 1.34
SHMT1-203ENST00000354098 MICAL2O94851 1124 aa23.45■■□□□ 1.34
SHMT1-203ENST00000354098 GYPCP04921 128 aa23.45■■□□□ 1.34
SHMT1-203ENST00000354098 CYP11B1P15538 503 aa23.45■■□□□ 1.34
SHMT1-203ENST00000354098 NPR3P17342 541 aa23.45■■□□□ 1.34
SHMT1-203ENST00000354098 ANXA13P27216 316 aa23.45■■□□□ 1.34
SHMT1-203ENST00000354098 NTHL1P78549 312 aa23.45■■□□□ 1.34
SHMT1-203ENST00000354098 PKDCCQ504Y2 493 aa23.45■■□□□ 1.34
SHMT1-203ENST00000354098 HS6ST3Q8IZP7 471 aa23.45■■□□□ 1.34
SHMT1-203ENST00000354098 ELMOD1Q8N336 334 aa23.45■■□□□ 1.34
SHMT1-203ENST00000354098 PSMG2Q969U7 264 aa23.45■■□□□ 1.34
SHMT1-203ENST00000354098 CORO1BQ9BR76 489 aa23.45■■□□□ 1.34
SHMT1-203ENST00000354098 EDEM3Q9BZQ6 932 aa23.45■■□□□ 1.34
SHMT1-203ENST00000354098 USP15Q9Y4E8 981 aaPredicted RBP23.45■■□□□ 1.34
SHMT1-203ENST00000354098 SLC38A8A6NNN8 435 aa23.44■■□□□ 1.34
SHMT1-203ENST00000354098 POU2F2P09086 479 aa23.44■■□□□ 1.34
SHMT1-203ENST00000354098 BPIFB4P59827 614 aa23.44■■□□□ 1.34
SHMT1-203ENST00000354098 PDE4CQ08493 712 aa23.44■■□□□ 1.34
SHMT1-203ENST00000354098 LEXMQ3ZCV2 418 aa23.44■■□□□ 1.34
SHMT1-203ENST00000354098 NOP9Q86U38 636 aaKnown RBP23.44■■□□□ 1.34
SHMT1-203ENST00000354098 SPATA17Q96L03 361 aa23.44■■□□□ 1.34
SHMT1-203ENST00000354098 HESX1Q9UBX0 185 aa23.44■■□□□ 1.34
SHMT1-203ENST00000354098 A0A1W2PQJ5 194 aa23.44■■□□□ 1.34
SHMT1-203ENST00000354098 M0QYV0 167 aa23.44■■□□□ 1.34
SHMT1-203ENST00000354098 MBTPS2O43462 519 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms