RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 YIPF1Q9Y548 306 aa12.64□□□□□ -0.39
SPTLC1-202ENST00000337841 FHOD1Q9Y613 1164 aa12.64□□□□□ -0.39
SPTLC1-202ENST00000337841 LAMA2P24043 3122 aaKnown RBP12.64□□□□□ -0.39
SPTLC1-202ENST00000337841 CYP26A1O43174 497 aa12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 AP1G2O75843 785 aa12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 CCDC172P0C7W6 258 aa12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 FAM200BP0CF97 657 aa12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 CCDC130P13994 396 aa12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 ZNF132P52740 706 aa12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 CLUL1Q15846 466 aa12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 DDR2Q16832 855 aa12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 CCDC142Q17RM4 750 aa12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 PPP1R26Q5T8A7 1209 aaPredicted RBP12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 CYP4A22Q5TCH4 519 aa12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 SARM1Q6SZW1 724 aa12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 PAQR9Q6ZVX9 377 aa12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 DNAJB7Q7Z6W7 309 aaPredicted RBP12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 FAM35AQ86V20 835 aa12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 FMNL3Q8IVF7 1028 aa12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 FAM71AQ8IYT1 594 aa12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 ANKRD52Q8NB46 1076 aa12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 GIPC2Q8TF65 315 aa12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 NECTIN4Q96NY8 510 aa12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 DUSP16Q9BY84 665 aa12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 ZNF518BQ9C0D4 1074 aa12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 EHD2Q9NZN4 543 aa12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.63□□□□□ -0.39
SPTLC1-202ENST00000337841 COL4A4P53420 1690 aaPredicted RBP12.62□□□□□ -0.39
SPTLC1-202ENST00000337841 ZNF197O14709 1029 aa12.62□□□□□ -0.39
SPTLC1-202ENST00000337841 SOAT2O75908 522 aa12.62□□□□□ -0.39
SPTLC1-202ENST00000337841 PAPLNO95428 1278 aa12.62□□□□□ -0.39
SPTLC1-202ENST00000337841 CSH1P0DML2 217 aa12.62□□□□□ -0.39
SPTLC1-202ENST00000337841 CSH2P0DML3 217 aa12.62□□□□□ -0.39
SPTLC1-202ENST00000337841 SOX5P35711 763 aa12.62□□□□□ -0.39
SPTLC1-202ENST00000337841 SMAD4Q13485 552 aaKnown RBP12.62□□□□□ -0.39
SPTLC1-202ENST00000337841 FIGNQ5HY92 759 aa12.62□□□□□ -0.39
SPTLC1-202ENST00000337841 LCLAT1Q6UWP7 414 aa12.62□□□□□ -0.39
SPTLC1-202ENST00000337841 TTC9BQ8N6N2 239 aa12.62□□□□□ -0.39
SPTLC1-202ENST00000337841 LEMD2Q8NC56 503 aa12.62□□□□□ -0.39
SPTLC1-202ENST00000337841 SMRP1Q8NCR6 262 aa12.62□□□□□ -0.39
SPTLC1-202ENST00000337841 ZNF397Q8NF99 534 aaPredicted RBP12.62□□□□□ -0.39
SPTLC1-202ENST00000337841 ZNF606Q8WXB4 792 aa12.62□□□□□ -0.39
SPTLC1-202ENST00000337841 ZNF707Q96C28 371 aaPredicted RBP12.62□□□□□ -0.39
SPTLC1-202ENST00000337841 SPATA17Q96L03 361 aa12.62□□□□□ -0.39
SPTLC1-202ENST00000337841 UBXN6Q9BZV1 441 aa12.62□□□□□ -0.39
SPTLC1-202ENST00000337841 DMAP1Q9NPF5 467 aaPredicted RBP12.62□□□□□ -0.39
SPTLC1-202ENST00000337841 THEGQ9P2T0 379 aa12.62□□□□□ -0.39
SPTLC1-202ENST00000337841 AJAP1Q9UKB5 411 aaPredicted RBP12.62□□□□□ -0.39
SPTLC1-202ENST00000337841 MYO6Q9UM54 1294 aa12.62□□□□□ -0.39
SPTLC1-202ENST00000337841 CHD7Q9P2D1 2997 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 SLC38A8A6NNN8 435 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 F8VP50 259 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 F8VZ95 297 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 EPHB6O15197 1021 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 THAP12O43422 761 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 MBTPS2O43462 519 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 FGF19O95750 216 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 GNA15P30679 374 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 CLCN1P35523 988 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 KRT9P35527 623 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 PBX1P40424 430 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 MAP3K7CLP57077 242 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 MRPS5P82675 430 aaKnown RBP12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 PTPN21Q16825 1174 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 GRASPQ7Z6J2 395 aaPredicted RBP12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 ATXN2LQ8WWM7 1075 aaKnown RBP12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 TFAP2BQ92481 460 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 PSMG2Q969U7 264 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 KCNK16Q96T55 309 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 CORO1BQ9BR76 489 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 NUCKS1Q9H1E3 243 aaKnown RBP12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 PDCL3Q9H2J4 239 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 CSNK1G1Q9HCP0 422 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 PRDM6Q9NQX0 595 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 KRT82Q9NSB4 513 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 COMMD8Q9NX08 183 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 DNMT3BQ9UBC3 853 aaKnown RBP12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 UXTQ9UBK9 157 aaPredicted RBP12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 TSPAN16Q9UKR8 245 aa12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 USP15Q9Y4E8 981 aaPredicted RBP12.61□□□□□ -0.39
SPTLC1-202ENST00000337841 VWA8A3KMH1 1905 aa12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 O00370 1275 aa12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 GFPT2O94808 682 aa12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 RTN3O95197 1032 aaPredicted RBP12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 TPM1P09493 284 aa12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 MYL4P12829 197 aa12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 FERP16591 822 aa12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 NPR3P17342 541 aa12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 ATF6P18850 670 aa12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 BRD2P25440 801 aaKnown RBP12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 GPR15P49685 360 aa12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 BCAT1P54687 386 aa12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 JAM2P57087 298 aa12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 GOLGA7BQ2TAP0 167 aa12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 PABPC1LQ4VXU2 614 aaKnown RBP12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 SDHAF4Q5VUM1 108 aa12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 SPECC1LQ69YQ0 1117 aa12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 PTCRAQ6ISU1 281 aaPredicted RBP12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 DENND5BQ6ZUT9 1274 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms