RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 ANKS3Q6ZW76 656 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 TSEN34Q9BSV6 310 aaKnown RBP7.18□□□□□ -1.26
SF3B1-201ENST00000335508 ZFATQ9P243 1243 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 VPS9D1Q9Y2B5 631 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 CAPN6Q9Y6Q1 641 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 PKD1L3Q7Z443 1732 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.18□□□□□ -1.26
SF3B1-201ENST00000335508 ANXA9O76027 345 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 RTN3O95197 1032 aaPredicted RBP7.18□□□□□ -1.26
SF3B1-201ENST00000335508 AMHP03971 560 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 NCAM1P13591 858 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 PMLP29590 882 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 OAS2P29728 719 aaKnown RBP7.18□□□□□ -1.26
SF3B1-201ENST00000335508 CREMQ03060 361 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 CBWD6Q4V339 395 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 CBWD3Q5JTY5 395 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 CBWD5Q5RIA9 395 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 JAMLQ86YT9 394 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 GBP7Q8N8V2 638 aaPredicted RBP7.18□□□□□ -1.26
SF3B1-201ENST00000335508 CALML6Q8TD86 181 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 C18orf25Q96B23 403 aaPredicted RBP7.18□□□□□ -1.26
SF3B1-201ENST00000335508 DEFB118Q96PH6 123 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 FSD1LQ9BXM9 530 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 TLR10Q9BXR5 811 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 PPANQ9NQ55 473 aaKnown RBP7.18□□□□□ -1.26
SF3B1-201ENST00000335508 DDX20Q9UHI6 824 aaKnown RBP7.18□□□□□ -1.26
SF3B1-201ENST00000335508 PTPN22Q9Y2R2 807 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 CRYBG1Q9Y4K1 1723 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 DLG5Q8TDM6 1919 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 CFAP99D6REC4 459 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 MMP8P22894 467 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 PCK1P35558 622 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 APLP1P51693 650 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 SOX10P56693 466 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 PTK7Q13308 1070 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 CLEC16AQ2KHT3 1053 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 MAP7D1Q3KQU3 841 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 ARHGAP15Q53QZ3 475 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 NOMO2Q5JPE7 1267 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 OLFML2BQ68BL8 750 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 DCLRE1AQ6PJP8 1040 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 FBXO32Q969P5 355 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 FAF2Q96CS3 445 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 SNF8Q96H20 258 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 TMEM161AQ9NX61 479 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 ABI2Q9NYB9 513 aaPredicted RBP7.18□□□□□ -1.26
SF3B1-201ENST00000335508 LMCD1Q9NZU5 365 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 SEPT10Q9P0V9 454 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 UXTQ9UBK9 157 aaPredicted RBP7.18□□□□□ -1.26
SF3B1-201ENST00000335508 GLI3P10071 1580 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 ZNF623O75123 536 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 LTFP02788 710 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 CSH1P0DML2 217 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 CSH2P0DML3 217 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 SNX1Q13596 522 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 CCDC6Q16204 474 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 HIF1AQ16665 826 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 EPC2Q52LR7 807 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 RABGAP1LQ5R372 815 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 IZUMO3Q5VZ72 239 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 LRRC6Q86X45 466 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 ARHGEF2Q92974 986 aaKnown RBP7.17□□□□□ -1.26
SF3B1-201ENST00000335508 TATDN2Q93075 761 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 GANQ9H2C0 597 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 KCNF1Q9H3M0 494 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 DDX43Q9NXZ2 648 aaKnown RBP7.17□□□□□ -1.26
SF3B1-201ENST00000335508 PCDHB8Q9UN66 801 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 KDM3BQ7LBC6 1761 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 SPTAN1Q13813 2472 aaKnown RBP7.17□□□□□ -1.26
SF3B1-201ENST00000335508 LRRIQ3A6PVS8 624 aaPredicted RBP7.17□□□□□ -1.26
SF3B1-201ENST00000335508 ATG7O95352 703 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 ADRB2P07550 413 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 PNMA6AP0CW24 399 aaPredicted RBP7.17□□□□□ -1.26
SF3B1-201ENST00000335508 CCR1P32246 355 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 SCNN1GP51170 649 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 UGCGQ16739 394 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 FAM187BQ17R55 369 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 CCDC149Q6ZUS6 474 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 DENND5BQ6ZUT9 1274 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 PHF13Q86YI8 300 aaPredicted RBP7.17□□□□□ -1.26
SF3B1-201ENST00000335508 UNC45BQ8IWX7 931 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 RXFP2Q8WXD0 754 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 FUBP3Q96I24 572 aaKnown RBP eCLIP7.17□□□□□ -1.26
SF3B1-201ENST00000335508 SP110Q9HB58 689 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 SHOC2Q9UQ13 582 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 BTNL10A8MVZ5 291 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 SMPD1P17405 629 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 NOS2P35228 1153 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 PRAMEP78395 509 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 SFSWAPQ12872 951 aaKnown RBP7.17□□□□□ -1.26
SF3B1-201ENST00000335508 FAM117BQ6P1L5 589 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 FBXO38Q6PIJ6 1188 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 B3GNT9Q6UX72 402 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 CACNA2D3Q8IZS8 1091 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 OR5B17Q8NGF7 314 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 BCAS4Q8TDM0 211 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 APBB2Q92870 758 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 RPRD1AQ96P16 312 aaPredicted RBP7.17□□□□□ -1.26
SF3B1-201ENST00000335508 RBM15Q96T37 977 aaKnown RBP eCLIP7.17□□□□□ -1.269e-6■□□□□ 8.2
SF3B1-201ENST00000335508 PPP1R12CQ9BZL4 782 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms