RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 DDX18Q9NVP1 670 aaKnown RBP11.96□□□□□ -0.5
VPS39-201ENST00000318006 STMN3Q9NZ72 180 aa11.96□□□□□ -0.5
VPS39-201ENST00000318006 MUTP22033 750 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 SNAPC2Q13487 334 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 BNC2Q6ZN30 1099 aaPredicted RBP11.95□□□□□ -0.5
VPS39-201ENST00000318006 PATL1Q86TB9 770 aaKnown RBP11.95□□□□□ -0.5
VPS39-201ENST00000318006 NDEL1Q9GZM8 345 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 METTL5Q9NRN9 209 aaKnown RBP11.95□□□□□ -0.5
VPS39-201ENST00000318006 GTF3C4Q9UKN8 822 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 TMX2Q9Y320 296 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 RASSF9O75901 435 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 GH1P01241 217 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 RALAP11233 206 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 PECAM1P16284 738 aaPredicted RBP11.95□□□□□ -0.5
VPS39-201ENST00000318006 OTUD4Q01804 1114 aaKnown RBP11.95□□□□□ -0.5
VPS39-201ENST00000318006 STILQ15468 1287 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 OR6P1Q8NGX9 317 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 HDAC7Q8WUI4 952 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 EFCAB1Q9HAE3 211 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 ZNF212Q9UDV6 495 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 F8W8V4 182 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 EXTL3O43909 919 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 PDAP1Q13442 181 aaKnown RBP11.95□□□□□ -0.5
VPS39-201ENST00000318006 USP10Q14694 798 aaKnown RBP11.95□□□□□ -0.5
VPS39-201ENST00000318006 LBRQ14739 615 aaKnown RBP11.95□□□□□ -0.5
VPS39-201ENST00000318006 KBTBD12Q3ZCT8 623 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 TMC3Q7Z5M5 1100 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 TAGAPQ8N103 731 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 ZNF513Q8N8E2 541 aaPredicted RBP11.95□□□□□ -0.5
VPS39-201ENST00000318006 ZNF184Q99676 751 aaPredicted RBP11.95□□□□□ -0.5
VPS39-201ENST00000318006 PAIP1Q9H074 479 aaKnown RBP11.95□□□□□ -0.5
VPS39-201ENST00000318006 THAP2Q9H0W7 228 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 EXOSC4Q9NPD3 245 aaKnown RBP11.95□□□□□ -0.5
VPS39-201ENST00000318006 CYP39A1Q9NYL5 469 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 CORO1CQ9ULV4 474 aaPredicted RBP11.95□□□□□ -0.5
VPS39-201ENST00000318006 PIN4Q9Y237 131 aaKnown RBP11.95□□□□□ -0.5
VPS39-201ENST00000318006 KPNA4O00629 521 aaPredicted RBP11.95□□□□□ -0.5
VPS39-201ENST00000318006 TNFAIP8O95379 198 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 PSMA4P25789 261 aaKnown RBP11.95□□□□□ -0.5
VPS39-201ENST00000318006 RGS2P41220 211 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 IER5Q5VY09 327 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 MFSD14CQ5VZR4 134 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 CENPPQ6IPU0 288 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 WDR60Q8WVS4 1066 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 PGM2Q96G03 612 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 GDF3Q9NR23 364 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 HACD3Q9P035 362 aa11.95□□□□□ -0.5
VPS39-201ENST00000318006 ZMYND8Q9ULU4 1186 aaPredicted RBP11.95□□□□□ -0.5
VPS39-201ENST00000318006 MYCP01106 439 aaPredicted RBP11.94□□□□□ -0.5
VPS39-201ENST00000318006 PYGLP06737 847 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 FAM153BP0C7A2 387 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 EPHB2P29323 1055 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 RAB14P61106 215 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 DDR1Q08345 913 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 FAM153CQ494X1 144 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 C6orf10Q5SRN2 563 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 P3H2Q8IVL5 708 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 TATDN2Q93075 761 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 MAP3K20Q9NYL2 800 aaKnown RBP11.94□□□□□ -0.5
VPS39-201ENST00000318006 ARHGAP20Q9P2F6 1191 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 TBX20Q9UMR3 447 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 SNX9Q9Y5X1 595 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 ANKRD26Q9UPS8 1709 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 ATMINO43313 823 aaPredicted RBP11.94□□□□□ -0.5
VPS39-201ENST00000318006 GSTT1P30711 240 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 ATP1A4Q13733 1029 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 TMEM132DQ14C87 1099 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 TTMPQ5BVD1 217 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 EP400NLQ6ZTU2 488 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.94□□□□□ -0.5
VPS39-201ENST00000318006 SCFD2Q8WU76 684 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 IFT43Q96FT9 208 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 SEMA4AQ9H3S1 761 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 SEMA6BQ9H3T3 888 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 SLC24A2Q9UI40 661 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 SNX13Q9Y5W8 968 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 ZSCAN9O15535 394 aaPredicted RBP11.94□□□□□ -0.5
VPS39-201ENST00000318006 RBP3P10745 1247 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 AQP5P55064 265 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 GIT2Q14161 759 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 INAQ16352 499 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 MROH9Q5TGP6 573 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 LAYNQ6UX15 382 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 CROCCP3Q8IVE0 287 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 CCDC60Q8IWA6 550 aaPredicted RBP11.94□□□□□ -0.5
VPS39-201ENST00000318006 TSEN2Q8NCE0 465 aaKnown RBP11.94□□□□□ -0.5
VPS39-201ENST00000318006 TARS2Q9BW92 718 aaKnown RBP11.94□□□□□ -0.5
VPS39-201ENST00000318006 BBS2Q9BXC9 721 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 A0A0A6YYK5 440 aaPredicted RBP11.94□□□□□ -0.5
VPS39-201ENST00000318006 TRPC5OSA6NMA1 111 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 TNPO2O14787 897 aaKnown RBP11.94□□□□□ -0.5
VPS39-201ENST00000318006 ZBTB39O15060 712 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 TM9SF1O15321 606 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 DYNC1LI2O43237 492 aaPredicted RBP11.94□□□□□ -0.5
VPS39-201ENST00000318006 ARP10275 920 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 SHMT1P34896 483 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 NME3Q13232 169 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 RBBP7Q16576 425 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 Q4G0T1 1027 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 EARS2Q5JPH6 523 aaKnown RBP11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms