RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 EPS8L3Q8TE67 593 aaKnown RBP6.95□□□□□ -1.3
ZNF540-201ENST00000316433 ATL1Q8WXF7 558 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 MRPL1Q9BYD6 325 aaKnown RBP6.95□□□□□ -1.3
ZNF540-201ENST00000316433 MLXIPLQ9NP71 852 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 C12orf4Q9NQ89 552 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 USP40Q9NVE5 1235 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 DDX56Q9NY93 547 aaKnown RBP6.95□□□□□ -1.3
ZNF540-201ENST00000316433 STARD13Q9Y3M8 1113 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 PCDHGA8Q9Y5G5 932 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 HEMK1Q9Y5R4 338 aaPredicted RBP6.95□□□□□ -1.3
ZNF540-201ENST00000316433 TSPY2A6NKD2 308 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 ALOX15BO15296 676 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 BUD23O43709 281 aaKnown RBP6.95□□□□□ -1.3
ZNF540-201ENST00000316433 PALMO75781 387 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 LYPLA2O95372 231 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 TSPY3P0CV98 308 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 TSPY8P0CW00 308 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 GZMAP12544 262 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 CHRNA3P32297 505 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 STX2P32856 288 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 SREBF1P36956 1147 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 SLC1A4P43007 532 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 APLP1P51693 650 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 HNRNPFP52597 415 aaKnown RBP6.95□□□□□ -1.3
ZNF540-201ENST00000316433 STAT2P52630 851 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 AP2B1P63010 937 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 DYNLL1P63167 89 aaKnown RBP6.95□□□□□ -1.3
ZNF540-201ENST00000316433 ADAM17P78536 824 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 TSPY1Q01534 308 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 TFAP4Q01664 338 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 KLRC3Q07444 240 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 AUHQ13825 339 aaKnown RBP6.95□□□□□ -1.3
ZNF540-201ENST00000316433 RPS6KA1Q15418 735 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 CCDC62Q6P9F0 684 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 VSTM1Q6UX27 236 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 PEX26Q7Z412 305 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 CYP2U1Q7Z449 544 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 LURAP1LQ8IV03 231 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 ATP6V0D2Q8N8Y2 350 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 PCYOX1LQ8NBM8 494 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 TNIP2Q8NFZ5 429 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 NPLOC4Q8TAT6 608 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 ZNF398Q8TD17 642 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 SCFD1Q8WVM8 642 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 SGF29Q96ES7 293 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 GMCL1Q96IK5 515 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 HAUS8Q9BT25 410 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 DDX47Q9H0S4 455 aaKnown RBP6.95□□□□□ -1.3
ZNF540-201ENST00000316433 ZFYVE28Q9HCC9 887 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 XAB2Q9HCS7 855 aaKnown RBP6.95□□□□□ -1.3
ZNF540-201ENST00000316433 KCNQ5Q9NR82 932 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 NCKIPSDQ9NZQ3 722 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 NYAP2Q9P242 653 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 HMGXB4Q9UGU5 601 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 LZTS1Q9Y250 596 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 A0A0G2JMZ2 1700 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 CENPBD1B2RD01 187 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 KLRF2D3W0D1 207 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 F8W8V4 182 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 RASGRF2O14827 1237 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 ADAMTS3O15072 1205 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 GYG2O15488 501 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 SEC24DO94855 1032 aaPredicted RBP6.94□□□□□ -1.3
ZNF540-201ENST00000316433 ZWINTO95229 277 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 FKBP9O95302 570 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 ZBTB11O95625 1053 aaPredicted RBP6.94□□□□□ -1.3
ZNF540-201ENST00000316433 ATP5BP06576 529 aaKnown RBP6.94□□□□□ -1.3
ZNF540-201ENST00000316433 NAGAP17050 411 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 AMPD1P23109 780 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 SLCO1A2P46721 670 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 CLK3P49761 638 aaKnown RBP6.94□□□□□ -1.3
ZNF540-201ENST00000316433 NUP107P57740 925 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 ATP1A4Q13733 1029 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 KRT81Q14533 505 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 SLC29A2Q14542 456 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 ACAP1Q15027 740 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 BBS9Q3SYG4 887 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 MMEL1Q495T6 779 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 RAPH1Q70E73 1250 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 SCYL3Q8IZE3 742 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 VPS52Q8N1B4 723 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 C7orf43Q8WVR3 580 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 CRAMP1Q96RY5 1269 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 ZKSCAN3Q9BRR0 538 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 CALN1Q9BXU9 219 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 UBN1Q9NPG3 1134 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 MTMR4Q9NYA4 1195 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 WHRNQ9P202 907 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 RSL24D1Q9UHA3 163 aaKnown RBP6.94□□□□□ -1.3
ZNF540-201ENST00000316433 RABGEF1Q9UJ41 708 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 ZFP69BQ9UJL9 534 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 DBR1Q9UK59 544 aaKnown RBP6.94□□□□□ -1.3
ZNF540-201ENST00000316433 CEPT1Q9Y6K0 416 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 SMCO2A6NFE2 343 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 H3BSA7 217 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 TAC1P20366 129 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 CASP1P29466 404 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 PTGIRP43119 386 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 KRT6CP48668 564 aa6.94□□□□□ -1.3
ZNF540-201ENST00000316433 IST1P53990 364 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms