RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W LYS2P07702 1392 aa2.25□□□□□ -2.05
UBP8YMR223W AGA2P32781 87 aa2.25□□□□□ -2.05
UBP8YMR223W CLB6P32943 380 aa2.25□□□□□ -2.05
UBP8YMR223W PHO88P38264 188 aaPredicted RBP2.25□□□□□ -2.05
UBP8YMR223W SNF11P38956 169 aa2.25□□□□□ -2.05
UBP8YMR223W PIR5P46999 287 aa2.25□□□□□ -2.05
UBP8YMR223W YNR077CP53758 84 aa2.25□□□□□ -2.05
UBP8YMR223W MZM1Q03429 123 aaPredicted RBP2.25□□□□□ -2.05
UBP8YMR223W YMR082CQ04276 118 aa2.25□□□□□ -2.05
UBP8YMR223W YMR090WQ04304 227 aaKnown RBP2.25□□□□□ -2.05
UBP8YMR223W SWC7Q06707 132 aa2.25□□□□□ -2.05
UBP8YMR223W HRT1Q08273 121 aa2.25□□□□□ -2.05
UBP8YMR223W IRC23Q08416 157 aa2.25□□□□□ -2.05
UBP8YMR223W YOR268CQ08734 132 aa2.25□□□□□ -2.05
UBP8YMR223W DNF1P32660 1571 aa2.25□□□□□ -2.05
UBP8YMR223W TY1B-DR1Q03855 1755 aa2.24□□□□□ -2.05
UBP8YMR223W TY1B-DR3Q99231 1755 aa2.24□□□□□ -2.05
UBP8YMR223W RPO31P04051 1460 aa2.24□□□□□ -2.05
UBP8YMR223W YKL044WP36092 106 aa2.24□□□□□ -2.05
UBP8YMR223W QCR10P37299 77 aa2.24□□□□□ -2.05
UBP8YMR223W YHR180WP38868 163 aa2.24□□□□□ -2.05
UBP8YMR223W IPT1P38954 527 aa2.24□□□□□ -2.05
UBP8YMR223W RPL13BP40212 199 aaKnown RBP2.24□□□□□ -2.05
UBP8YMR223W SEN15Q04675 128 aa2.24□□□□□ -2.05
UBP8YMR223W SOM1Q05676 74 aa2.24□□□□□ -2.05
UBP8YMR223W GPI11Q06636 219 aa2.24□□□□□ -2.05
UBP8YMR223W CAT8P39113 1433 aa2.23□□□□□ -2.05
UBP8YMR223W YGL010WP25338 174 aa2.23□□□□□ -2.05
UBP8YMR223W MIG1P27705 504 aa2.23□□□□□ -2.05
UBP8YMR223W YEL067CP39978 195 aa2.23□□□□□ -2.05
UBP8YMR223W YJL027CP47063 138 aaPredicted RBP2.23□□□□□ -2.05
UBP8YMR223W YHP1Q04116 353 aa2.23□□□□□ -2.05
UBP8YMR223W YDR029WQ12111 104 aa2.23□□□□□ -2.05
UBP8YMR223W YOR015WQ12169 119 aa2.23□□□□□ -2.05
UBP8YMR223W SIN3P22579 1536 aa2.22□□□□□ -2.05
UBP8YMR223W SRB6P32570 121 aa2.22□□□□□ -2.05
UBP8YMR223W COA4Q05809 96 aa2.22□□□□□ -2.05
UBP8YMR223W IRC19Q07843 230 aa2.22□□□□□ -2.05
UBP8YMR223W YLR365WQ7LIF2 110 aa2.22□□□□□ -2.05
UBP8YMR223W CDC25P04821 1589 aa2.22□□□□□ -2.05
UBP8YMR223W UFD4P33202 1483 aa2.21□□□□□ -2.06
UBP8YMR223W TY3B-IQ7LHG5 1498 aaKnown RBP2.21□□□□□ -2.06
UBP8YMR223W INO4P13902 151 aa2.21□□□□□ -2.06
UBP8YMR223W FYV5P25585 152 aa2.21□□□□□ -2.06
UBP8YMR223W MPC1P53157 130 aaKnown RBP2.21□□□□□ -2.06
UBP8YMR223W YGR026WP53217 278 aa2.21□□□□□ -2.06
UBP8YMR223W YPL067CQ02754 198 aa2.21□□□□□ -2.06
UBP8YMR223W GPI19Q04082 140 aa2.21□□□□□ -2.06
UBP8YMR223W RRT15Q3E811 62 aa2.21□□□□□ -2.06
UBP8YMR223W MRPL44P19956 98 aa2.2□□□□□ -2.06
UBP8YMR223W TDA2P40045 126 aa2.2□□□□□ -2.06
UBP8YMR223W PEP8P40335 379 aa2.2□□□□□ -2.06
UBP8YMR223W ERV14P53173 138 aa2.2□□□□□ -2.06
UBP8YMR223W THG1P53215 237 aaKnown RBP2.2□□□□□ -2.06
UBP8YMR223W YOS1Q3E834 85 aa2.2□□□□□ -2.06
UBP8YMR223W IRC20Q06554 1556 aa2.19□□□□□ -2.06
UBP8YMR223W RPA190P10964 1664 aaKnown RBP2.19□□□□□ -2.06
UBP8YMR223W RPL40AP0CH08 128 aaKnown RBP2.19□□□□□ -2.06
UBP8YMR223W RPL40BP0CH09 128 aaKnown RBP2.19□□□□□ -2.06
UBP8YMR223W YKR032WP36127 104 aa2.19□□□□□ -2.06
UBP8YMR223W PIR1Q03178 341 aa2.19□□□□□ -2.06
UBP8YMR223W UPS3Q04006 179 aa2.19□□□□□ -2.06
UBP8YMR223W RAF1Q06891 181 aa2.19□□□□□ -2.06
UBP8YMR223W ATG41Q12048 136 aa2.19□□□□□ -2.06
UBP8YMR223W TY1B-NL2Q99337 1749 aaKnown RBP2.19□□□□□ -2.06
UBP8YMR223W SCC2Q04002 1493 aa2.19□□□□□ -2.06
UBP8YMR223W FAS1P07149 2051 aaKnown RBP2.19□□□□□ -2.06
UBP8YMR223W MSB2P32334 1306 aa2.19□□□□□ -2.06
UBP8YMR223W TY2B-LR1P0C2J3 1770 aa2.19□□□□□ -2.06
UBP8YMR223W TY2B-FP0CX63 1770 aa2.19□□□□□ -2.06
UBP8YMR223W TY2B-GR2P0CX64 1770 aa2.19□□□□□ -2.06
UBP8YMR223W TY2B-CP25384 1770 aa2.19□□□□□ -2.06
UBP8YMR223W TY2B-DR2Q03494 1770 aa2.19□□□□□ -2.06
UBP8YMR223W TY2B-DR3Q07791 1770 aaKnown RBP2.19□□□□□ -2.06
UBP8YMR223W TY2B-OR1Q12113 1770 aa2.19□□□□□ -2.06
UBP8YMR223W TY1B-GR3Q12316 1755 aa2.19□□□□□ -2.06
UBP8YMR223W TY2B-DR1Q12472 1770 aa2.19□□□□□ -2.06
UBP8YMR223W TY2B-OR2Q12501 1770 aa2.19□□□□□ -2.06
UBP8YMR223W TY1B-ORQ92393 1755 aa2.19□□□□□ -2.06
UBP8YMR223W ESP1Q03018 1630 aa2.18□□□□□ -2.06
UBP8YMR223W MDM35O60200 86 aa2.18□□□□□ -2.06
UBP8YMR223W MRPL11P36521 249 aaPredicted RBP2.18□□□□□ -2.06
UBP8YMR223W HPA3P39979 161 aa2.18□□□□□ -2.06
UBP8YMR223W EMC5P40540 141 aa2.18□□□□□ -2.06
UBP8YMR223W TIR3P40552 269 aa2.18□□□□□ -2.06
UBP8YMR223W PAU12P53343 120 aa2.18□□□□□ -2.06
UBP8YMR223W YPR013CQ12145 317 aa2.18□□□□□ -2.06
UBP8YMR223W ATG40Q99325 256 aa2.18□□□□□ -2.06
UBP8YMR223W RKR1Q04781 1562 aa2.18□□□□□ -2.06
UBP8YMR223W ECM12O13529 151 aa2.17□□□□□ -2.06
UBP8YMR223W YPR096CO13587 100 aa2.17□□□□□ -2.06
UBP8YMR223W PAU2P32612 120 aa2.17□□□□□ -2.06
UBP8YMR223W YER187WP40102 141 aa2.17□□□□□ -2.06
UBP8YMR223W MSL1P40567 111 aaPredicted RBP2.17□□□□□ -2.06
UBP8YMR223W CWP2P43497 92 aa2.17□□□□□ -2.06
UBP8YMR223W YJL144WP47009 104 aa2.17□□□□□ -2.06
UBP8YMR223W YRF1-2P40105 1681 aa2.17□□□□□ -2.06
UBP8YMR223W YLR236CA0A023PZG4 107 aa2.17□□□□□ -2.06
UBP8YMR223W RPS23AP0CX29 145 aaKnown RBP2.17□□□□□ -2.06
UBP8YMR223W RPS23BP0CX30 145 aa2.17□□□□□ -2.06
Retrieved 100 of 5,963 RNA–protein pairs in 63.7 ms