RNA–Protein interactions for RNA: YKL139W

CTK1, Transcript of Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I), yeastyeast

Gene CTK1, Length 1,587 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CTK1YKL139W YKR070WP36151 352 aaKnown RBP1.97□□□□□ -2.09
CTK1YKL139W YFL051CP43552 160 aa1.97□□□□□ -2.09
CTK1YKL139W SDH7Q04401 133 aa1.97□□□□□ -2.09
CTK1YKL139W DNF1P32660 1571 aa1.97□□□□□ -2.09
CTK1YKL139W QCR10P37299 77 aa1.96□□□□□ -2.1
CTK1YKL139W YBR027CP38220 110 aa1.96□□□□□ -2.1
CTK1YKL139W YHL037CP38733 133 aa1.96□□□□□ -2.1
CTK1YKL139W VPS13Q07878 3144 aa1.96□□□□□ -2.1
CTK1YKL139W HYP2P23301 157 aaKnown RBP1.95□□□□□ -2.1
CTK1YKL139W VAM10Q08474 114 aa1.95□□□□□ -2.1
CTK1YKL139W VAR1P02381 398 aa1.94□□□□□ -2.1
CTK1YKL139W CUP1-1P0CX80 61 aa1.94□□□□□ -2.1
CTK1YKL139W CUP1-2P0CX81 61 aa1.94□□□□□ -2.1
CTK1YKL139W NAT5Q08689 176 aa1.94□□□□□ -2.1
CTK1YKL139W MRPL44P19956 98 aa1.93□□□□□ -2.1
CTK1YKL139W GAT4P40569 121 aa1.93□□□□□ -2.1
CTK1YKL139W VMA7P39111 118 aa1.93□□□□□ -2.1
CTK1YKL139W DCV1P43595 202 aa1.93□□□□□ -2.1
CTK1YKL139W GCN1P33892 2672 aaKnown RBP1.93□□□□□ -2.1
CTK1YKL139W FUN14P18411 198 aa1.92□□□□□ -2.1
CTK1YKL139W SFT2P38166 215 aa1.92□□□□□ -2.1
CTK1YKL139W ATG8P38182 117 aaRIP-Chip data1.92□□□□□ -2.1not detected
CTK1YKL139W BRP1P53194 125 aa1.92□□□□□ -2.1
CTK1YKL139W FRQ1Q06389 190 aa1.92□□□□□ -2.1
CTK1YKL139W WIP1Q2V2P8 89 aa1.92□□□□□ -2.1
CTK1YKL139W SED1Q01589 338 aa1.91□□□□□ -2.1
CTK1YKL139W YLR099W-AQ3E798 87 aa1.91□□□□□ -2.1
CTK1YKL139W MHF1Q3E835 90 aa1.91□□□□□ -2.1
CTK1YKL139W MDS3P53094 1487 aa1.91□□□□□ -2.1
CTK1YKL139W YLR118CQ12354 227 aa1.9□□□□□ -2.1
CTK1YKL139W RPL33AP05744 107 aaKnown RBP1.89□□□□□ -2.11
CTK1YKL139W YGL149WP53116 101 aa1.89□□□□□ -2.11
CTK1YKL139W MPC1P53157 130 aaKnown RBP1.89□□□□□ -2.11
CTK1YKL139W SAE3P89114 91 aa1.89□□□□□ -2.11
CTK1YKL139W YPL067CQ02754 198 aa1.89□□□□□ -2.11
CTK1YKL139W RIF1P29539 1916 aa1.89□□□□□ -2.11
CTK1YKL139W HSL1P34244 1518 aa1.89□□□□□ -2.11
CTK1YKL139W NMT1P14743 455 aa1.89□□□□□ -2.11
CTK1YKL139W AIM11P87275 137 aa1.89□□□□□ -2.11
CTK1YKL139W YGL014C-AP0C5N1 53 aa1.88□□□□□ -2.11
CTK1YKL139W PAU21P0CE86 164 aa1.88□□□□□ -2.11
CTK1YKL139W PAU22P0CE87 164 aa1.88□□□□□ -2.11
CTK1YKL139W SPC24Q04477 213 aa1.88□□□□□ -2.11
CTK1YKL139W RPO41P13433 1351 aaKnown RBP1.88□□□□□ -2.11
CTK1YKL139W MMS1Q06211 1407 aa1.88□□□□□ -2.11
CTK1YKL139W REV3P14284 1504 aa1.87□□□□□ -2.11
CTK1YKL139W SEN15Q04675 128 aa1.87□□□□□ -2.11
CTK1YKL139W PRP8P33334 2413 aaKnown RBP1.87□□□□□ -2.11
CTK1YKL139W FMP27Q06179 2628 aa1.86□□□□□ -2.11
CTK1YKL139W UGX2P32772 223 aa1.86□□□□□ -2.11
CTK1YKL139W HSP10P38910 106 aa1.86□□□□□ -2.11
CTK1YKL139W YOR376W-AQ3E805 51 aa1.86□□□□□ -2.11
CTK1YKL139W MYO2P19524 1574 aaKnown RBP1.86□□□□□ -2.11
CTK1YKL139W ECM5Q03214 1411 aa1.85□□□□□ -2.11
CTK1YKL139W RPL40AP0CH08 128 aaKnown RBP1.85□□□□□ -2.11
CTK1YKL139W RPL40BP0CH09 128 aaKnown RBP1.85□□□□□ -2.11
CTK1YKL139W YHR213WP0CI67 198 aa1.85□□□□□ -2.11
CTK1YKL139W ANB1P19211 157 aa1.85□□□□□ -2.11
CTK1YKL139W SRL3P36167 246 aa1.85□□□□□ -2.11
CTK1YKL139W YAR064WP39563 99 aa1.85□□□□□ -2.11
CTK1YKL139W LST8P41318 303 aa1.85□□□□□ -2.11
CTK1YKL139W APS2Q00381 147 aa1.85□□□□□ -2.11
CTK1YKL139W MRPL11P36521 249 aaPredicted RBP1.84□□□□□ -2.12
CTK1YKL139W YMR122CQ03879 124 aa1.84□□□□□ -2.12
CTK1YKL139W UTP20P35194 2493 aaKnown RBP1.83□□□□□ -2.12
CTK1YKL139W RTC6O14464 93 aa1.83□□□□□ -2.12
CTK1YKL139W HAP3P13434 144 aa1.83□□□□□ -2.12
CTK1YKL139W HUA1P40325 198 aa1.83□□□□□ -2.12
CTK1YKL139W ERV14P53173 138 aa1.83□□□□□ -2.12
CTK1YKL139W YMR007WQ03675 126 aa1.83□□□□□ -2.12
CTK1YKL139W YLR296WQ05898 108 aa1.83□□□□□ -2.12
CTK1YKL139W YOR093CQ12275 1648 aa1.82□□□□□ -2.12
CTK1YKL139W SEC59P20048 519 aa1.82□□□□□ -2.12
CTK1YKL139W UTP11P34247 250 aaPredicted RBP1.82□□□□□ -2.12
CTK1YKL139W YKL044WP36092 106 aa1.82□□□□□ -2.12
CTK1YKL139W RPB11P38902 120 aa1.82□□□□□ -2.12
CTK1YKL139W AIM36Q03798 255 aa1.82□□□□□ -2.12
CTK1YKL139W CCW12Q12127 133 aa1.82□□□□□ -2.12
CTK1YKL139W YIR021W-AQ3E739 70 aa1.82□□□□□ -2.12
CTK1YKL139W YNL122CP53921 115 aaPredicted RBP1.81□□□□□ -2.12
CTK1YKL139W PRM3Q08931 133 aa1.81□□□□□ -2.12
CTK1YKL139W GTT2Q12390 233 aa1.81□□□□□ -2.12
CTK1YKL139W CDC39P25655 2108 aaKnown RBP1.81□□□□□ -2.12
CTK1YKL139W TEL1P38110 2787 aa1.81□□□□□ -2.12
CTK1YKL139W AIM18P38884 321 aa1.8□□□□□ -2.12
CTK1YKL139W LTE1P07866 1435 aa1.8□□□□□ -2.12
CTK1YKL139W TAO3P40468 2376 aa1.79□□□□□ -2.12
CTK1YKL139W YCR001WP25347 104 aa1.79□□□□□ -2.12
CTK1YKL139W COA4Q05809 96 aa1.79□□□□□ -2.12
CTK1YKL139W LDB18Q07887 179 aa1.79□□□□□ -2.12
CTK1YKL139W ADK1P07170 222 aaKnown RBP1.78□□□□□ -2.12
CTK1YKL139W AIM4P38305 123 aaPredicted RBP1.78□□□□□ -2.12
CTK1YKL139W SNF11P38956 169 aa1.78□□□□□ -2.12
CTK1YKL139W YIL102CP40488 101 aa1.78□□□□□ -2.12
CTK1YKL139W GPI19Q04082 140 aa1.78□□□□□ -2.12
CTK1YKL139W TRM732Q03496 1420 aa1.77□□□□□ -2.13
CTK1YKL139W YOR304C-AO14468 76 aa1.77□□□□□ -2.13
CTK1YKL139W PFY1P07274 126 aa1.77□□□□□ -2.13
CTK1YKL139W YOL013W-AP0C272 63 aaPredicted RBP1.77□□□□□ -2.13
CTK1YKL139W YFR035CP43608 114 aa1.77□□□□□ -2.13
Retrieved 100 of 5,963 RNA–protein pairs in 74.2 ms