RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C RPL33AP05744 107 aaKnown RBP0.62□□□□□ -2.31
RTR1YER139C AQY2P0CD90 149 aa0.62□□□□□ -2.31
RTR1YER139C PAU21P0CE86 164 aa0.62□□□□□ -2.31
RTR1YER139C PAU22P0CE87 164 aa0.62□□□□□ -2.31
RTR1YER139C YCR050CP25630 102 aa0.62□□□□□ -2.31
RTR1YER139C MRP49P32388 137 aa0.62□□□□□ -2.31
RTR1YER139C RPL14AP36105 138 aaKnown RBP0.62□□□□□ -2.31
RTR1YER139C YKR070WP36151 352 aaKnown RBP0.62□□□□□ -2.31
RTR1YER139C MRPL15P36523 253 aa0.62□□□□□ -2.31
RTR1YER139C YBR242WP38331 238 aa0.62□□□□□ -2.31
RTR1YER139C RPL14BP38754 138 aaKnown RBP0.62□□□□□ -2.31
RTR1YER139C YAR064WP39563 99 aa0.62□□□□□ -2.31
RTR1YER139C YIL102CP40488 101 aa0.62□□□□□ -2.31
RTR1YER139C DCV1P43595 202 aa0.62□□□□□ -2.31
RTR1YER139C YNL122CP53921 115 aaPredicted RBP0.62□□□□□ -2.31
RTR1YER139C AIM36Q03798 255 aa0.62□□□□□ -2.31
RTR1YER139C YLR118CQ12354 227 aa0.62□□□□□ -2.31
RTR1YER139C CMC4Q3E7A9 73 aa0.62□□□□□ -2.31
RTR1YER139C TAR1Q8TGM6 124 aa0.62□□□□□ -2.31
RTR1YER139C YER188C-AP0C0V2 99 aa0.61□□□□□ -2.31
RTR1YER139C YHR213WP0CI67 198 aa0.61□□□□□ -2.31
RTR1YER139C YCR099CP25657 155 aa0.61□□□□□ -2.31
RTR1YER139C GSP1P32835 219 aaKnown RBP0.61□□□□□ -2.31
RTR1YER139C MRPL11P36521 249 aaPredicted RBP0.61□□□□□ -2.31
RTR1YER139C YHL037CP38733 133 aa0.61□□□□□ -2.31
RTR1YER139C HSP10P38910 106 aa0.61□□□□□ -2.31
RTR1YER139C YGL230CP53074 147 aa0.61□□□□□ -2.31
RTR1YER139C YCL001W-AP87012 153 aa0.61□□□□□ -2.31
RTR1YER139C ARL3Q02804 198 aa0.61□□□□□ -2.31
RTR1YER139C SPC24Q04477 213 aa0.61□□□□□ -2.31
RTR1YER139C YLR296WQ05898 108 aa0.61□□□□□ -2.31
RTR1YER139C YOR072WQ08486 104 aa0.61□□□□□ -2.31
RTR1YER139C YOR097CQ12274 175 aaPredicted RBP0.61□□□□□ -2.31
RTR1YER139C MYO2P19524 1574 aaKnown RBP0.61□□□□□ -2.31
RTR1YER139C MDS3P53094 1487 aa0.61□□□□□ -2.31
RTR1YER139C DUR1,2P32528 1835 aaKnown RBP0.6□□□□□ -2.31
RTR1YER139C RPL36BO14455 100 aaKnown RBP0.6□□□□□ -2.31
RTR1YER139C RTC6O14464 93 aa0.6□□□□□ -2.31
RTR1YER139C RPL36AP05745 100 aaPredicted RBP0.6□□□□□ -2.31
RTR1YER139C YJL197C-AP0C5P0 93 aa0.6□□□□□ -2.31
RTR1YER139C NMT1P14743 455 aa0.6□□□□□ -2.31
RTR1YER139C FUN14P18411 198 aa0.6□□□□□ -2.31
RTR1YER139C HUA1P40325 198 aa0.6□□□□□ -2.31
RTR1YER139C LST8P41318 303 aa0.6□□□□□ -2.31
RTR1YER139C YGR164WP53291 111 aa0.6□□□□□ -2.31
RTR1YER139C SAE3P89114 91 aa0.6□□□□□ -2.31
RTR1YER139C YPL067CQ02754 198 aa0.6□□□□□ -2.31
RTR1YER139C GPI19Q04082 140 aa0.6□□□□□ -2.31
RTR1YER139C TVP18Q04767 167 aa0.6□□□□□ -2.31
RTR1YER139C LCL2Q08045 131 aa0.6□□□□□ -2.31
RTR1YER139C FCF2Q12035 217 aaPredicted RBP0.6□□□□□ -2.31
RTR1YER139C SLH1P53327 1967 aaKnown RBP0.59□□□□□ -2.31
RTR1YER139C HSL1P34244 1518 aa0.59□□□□□ -2.31
RTR1YER139C HAP2P06774 265 aa0.59□□□□□ -2.31
RTR1YER139C YGL014C-AP0C5N1 53 aa0.59□□□□□ -2.31
RTR1YER139C HYM1P32464 399 aa0.59□□□□□ -2.31
RTR1YER139C AIM18P38884 321 aa0.59□□□□□ -2.31
RTR1YER139C RPB11P38902 120 aa0.59□□□□□ -2.31
RTR1YER139C YAL064WP39711 94 aa0.59□□□□□ -2.31
RTR1YER139C RPL37BP51402 88 aaKnown RBP0.59□□□□□ -2.31
RTR1YER139C YIL014C-AQ02598 104 aa0.59□□□□□ -2.31
RTR1YER139C YMR122CQ03879 124 aa0.59□□□□□ -2.31
RTR1YER139C SWC7Q06707 132 aa0.59□□□□□ -2.31
RTR1YER139C YPR203WQ08994 102 aa0.59□□□□□ -2.31
RTR1YER139C GTT2Q12390 233 aa0.59□□□□□ -2.31
RTR1YER139C WIP1Q2V2P8 89 aa0.59□□□□□ -2.31
RTR1YER139C YLR099W-AQ3E798 87 aa0.59□□□□□ -2.31
RTR1YER139C MHF1Q3E835 90 aa0.59□□□□□ -2.31
RTR1YER139C COA6Q3E846 104 aa0.59□□□□□ -2.31
RTR1YER139C YLR422WQ06409 1932 aa0.59□□□□□ -2.32
RTR1YER139C RPS22AP0C0W1 130 aaKnown RBP0.58□□□□□ -2.32
RTR1YER139C SEC59P20048 519 aa0.58□□□□□ -2.32
RTR1YER139C YCR001WP25347 104 aa0.58□□□□□ -2.32
RTR1YER139C YKL044WP36092 106 aa0.58□□□□□ -2.32
RTR1YER139C ICS3P47034 131 aa0.58□□□□□ -2.32
RTR1YER139C YGL149WP53116 101 aa0.58□□□□□ -2.32
RTR1YER139C ERV14P53173 138 aa0.58□□□□□ -2.32
RTR1YER139C RPS22BQ3E7Y3 130 aaKnown RBP0.58□□□□□ -2.32
RTR1YER139C SPP41P38904 1435 aa0.57□□□□□ -2.32
RTR1YER139C TRM732Q03496 1420 aa0.57□□□□□ -2.32
RTR1YER139C YOR304C-AO14468 76 aa0.57□□□□□ -2.32
RTR1YER139C GTT1P40582 234 aa0.57□□□□□ -2.32
RTR1YER139C YFR035CP43608 114 aa0.57□□□□□ -2.32
RTR1YER139C MGR2Q02889 113 aa0.57□□□□□ -2.32
RTR1YER139C COA4Q05809 96 aa0.57□□□□□ -2.32
RTR1YER139C LDB18Q07887 179 aa0.57□□□□□ -2.32
RTR1YER139C RTR2Q12378 196 aa0.57□□□□□ -2.32
RTR1YER139C UGX2P32772 223 aa0.56□□□□□ -2.32
RTR1YER139C ATG8P38182 117 aaRIP-Chip data0.56□□□□□ -2.32not detected
RTR1YER139C RGI1P40043 161 aaPredicted RBP0.56□□□□□ -2.32
RTR1YER139C FIT3Q08907 204 aa0.56□□□□□ -2.32
RTR1YER139C YPL261CQ08976 102 aa0.56□□□□□ -2.32
RTR1YER139C YLR365WQ7LIF2 110 aa0.56□□□□□ -2.32
RTR1YER139C OST5Q92316 86 aa0.56□□□□□ -2.32
RTR1YER139C MED11Q99278 115 aa0.56□□□□□ -2.32
RTR1YER139C UBR1P19812 1950 aa0.56□□□□□ -2.32
RTR1YER139C TSC11P40061 1430 aa0.55□□□□□ -2.32
RTR1YER139C SNT2P53127 1403 aa0.55□□□□□ -2.32
RTR1YER139C YSF3P0C074 85 aaPredicted RBP0.55□□□□□ -2.32
RTR1YER139C YER039C-AP0CD97 72 aa0.55□□□□□ -2.32
Retrieved 100 of 5,963 RNA–protein pairs in 11.8 ms