RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 SLC7A3Q8WY07 619 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 ZNF333Q96JL9 665 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 ADA2Q9NZK5 511 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 TAGLN3Q9UI15 199 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 DTNAQ9Y4J8 743 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 ARFGEF2Q9Y6D5 1785 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 ZMPSTE24O75844 475 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 LYNP07948 512 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 TYK2P29597 1187 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 COPAP53621 1224 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 VCPP55072 806 aaKnown RBP11.53□□□□□ -0.56
CLN3-244ENST00000636147 R3HDM1Q15032 1099 aaKnown RBP11.53□□□□□ -0.56
CLN3-244ENST00000636147 EFHC1Q5JVL4 640 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 SLC10A5Q5PT55 438 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 GPAT2Q6NUI2 795 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 RINLQ6ZS11 566 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 GSTCDQ8NEC7 633 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 FAM81AQ8TBF8 368 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 WDR60Q8WVS4 1066 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 SHC3Q92529 594 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 SRPK1Q96SB4 655 aaKnown RBP11.53□□□□□ -0.56
CLN3-244ENST00000636147 THEGQ9P2T0 379 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 LRRC42Q9Y546 428 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 COL1A1P02452 1464 aaPredicted RBP11.53□□□□□ -0.56
CLN3-244ENST00000636147 ARHGAP10A1A4S6 786 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 KBTBD13C9JR72 458 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 HNRNPRO43390 633 aaKnown RBP11.53□□□□□ -0.56
CLN3-244ENST00000636147 PROCP04070 461 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 CCNFP41002 786 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 NEK3P51956 506 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 RPL10AP62906 217 aaKnown RBP11.53□□□□□ -0.56
CLN3-244ENST00000636147 DLGAP5Q15398 846 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 BMT2Q1RMZ1 405 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 TFDP3Q5H9I0 405 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 LPCAT4Q643R3 524 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 TRIM72Q6ZMU5 477 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 DEFB107AQ8IZN7 70 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 TMEM143Q96AN5 459 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 SERPINI1Q99574 410 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 SCAF8Q9UPN6 1271 aaKnown RBP11.53□□□□□ -0.56
CLN3-244ENST00000636147 DNAJC16Q9Y2G8 782 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 ZMYM2Q9UBW7 1377 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 FRMPD4Q14CM0 1322 aa11.52□□□□□ -0.56
CLN3-244ENST00000636147 SLC26A4O43511 780 aa11.52□□□□□ -0.56
CLN3-244ENST00000636147 SEC24DO94855 1032 aaPredicted RBP11.52□□□□□ -0.56
CLN3-244ENST00000636147 TNNC2P02585 160 aa11.52□□□□□ -0.56
CLN3-244ENST00000636147 CCNB1P14635 433 aa11.52□□□□□ -0.56
CLN3-244ENST00000636147 HIRAP54198 1017 aaPredicted RBP11.52□□□□□ -0.56
CLN3-244ENST00000636147 PSMC5P62195 406 aa11.52□□□□□ -0.56
CLN3-244ENST00000636147 ESRRGP62508 458 aa11.52□□□□□ -0.56
CLN3-244ENST00000636147 CCDC15Q0P6D6 951 aa11.52□□□□□ -0.56
CLN3-244ENST00000636147 ACVR2BQ13705 512 aa11.52□□□□□ -0.56
CLN3-244ENST00000636147 LBRQ14739 615 aaKnown RBP11.52□□□□□ -0.56
CLN3-244ENST00000636147 RARS2Q5T160 578 aaKnown RBP11.52□□□□□ -0.56
CLN3-244ENST00000636147 FAM102AQ5T9C2 384 aaPredicted RBP11.52□□□□□ -0.56
CLN3-244ENST00000636147 DNAAF3Q8N9W5 541 aa11.52□□□□□ -0.56
CLN3-244ENST00000636147 GDPD5Q8WTR4 605 aa11.52□□□□□ -0.56
CLN3-244ENST00000636147 AGBL1Q96MI9 1066 aa11.52□□□□□ -0.56
CLN3-244ENST00000636147 HSD17B14Q9BPX1 270 aa11.52□□□□□ -0.56
CLN3-244ENST00000636147 ADPGKQ9BRR6 497 aa11.52□□□□□ -0.56
CLN3-244ENST00000636147 WDR18Q9BV38 432 aa11.52□□□□□ -0.56
CLN3-244ENST00000636147 TRPV6Q9H1D0 765 aa11.52□□□□□ -0.56
CLN3-244ENST00000636147 SUDS3Q9H7L9 328 aaPredicted RBP11.52□□□□□ -0.56
CLN3-244ENST00000636147 TM9SF1O15321 606 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 GLRA2P23416 452 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 NPTX2P47972 431 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 AP1B1Q10567 949 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 NCOA4Q13772 614 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 SLC27A3Q5K4L6 730 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 GLIS1Q8NBF1 620 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 RBM15BQ8NDT2 890 aaKnown RBP11.52□□□□□ -0.57
CLN3-244ENST00000636147 PPP1R16BQ96T49 567 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 EPAS1Q99814 870 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 TXLNGYQ9BZA5 131 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 AAASQ9NRG9 546 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 C5P01031 1676 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 COL5A2P05997 1499 aaPredicted RBP11.52□□□□□ -0.57
CLN3-244ENST00000636147 INO80B-WBP1J3KQ70 363 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 GPC4O75487 556 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 BST1Q10588 318 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 CYLC2Q14093 348 aaPredicted RBP11.52□□□□□ -0.57
CLN3-244ENST00000636147 UBAP2LQ14157 1087 aaKnown RBP11.52□□□□□ -0.57
CLN3-244ENST00000636147 CDCA2Q69YH5 1023 aaPredicted RBP11.52□□□□□ -0.57
CLN3-244ENST00000636147 PRR5LQ6MZQ0 368 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 LCA5Q86VQ0 697 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 MCF2L2Q86YR7 1114 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 LRRN4Q8WUT4 740 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 TRAPPC9Q96Q05 1148 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 ECSITQ9BQ95 431 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 INO80BQ9C086 356 aaPredicted RBP11.52□□□□□ -0.57
CLN3-244ENST00000636147 KLHL4Q9C0H6 718 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 POLR3FQ9H1D9 316 aaPredicted RBP11.52□□□□□ -0.57
CLN3-244ENST00000636147 GALNT8Q9NY28 637 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 DDX56Q9NY93 547 aaKnown RBP11.52□□□□□ -0.57
CLN3-244ENST00000636147 KCND2Q9NZV8 630 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 C4AP0C0L4 1744 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 C4BP0C0L5 1744 aa11.52□□□□□ -0.57
CLN3-244ENST00000636147 A0A1B0GVG6 124 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 CCDC78A2IDD5 438 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 OSBPP22059 807 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms