RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 RASSF9O75901 435 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 DEXIO95424 95 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 TTLL1O95922 423 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 FAM107AO95990 144 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 AFPP02771 609 aaKnown RBP4.47□□□□□ -1.69
LIG3-211ENST00000588713 CHGBP05060 677 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 MYL1P05976 194 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 URODP06132 367 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 PAEPP09466 180 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 MYBL2P10244 700 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 MYCLP12524 364 aaPredicted RBP4.47□□□□□ -1.69
LIG3-211ENST00000588713 HLA-EP13747 358 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 EZRP15311 586 aaKnown RBP4.47□□□□□ -1.69
LIG3-211ENST00000588713 NR1D1P20393 614 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 RASA1P20936 1047 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 GRNP28799 593 aaKnown RBP4.47□□□□□ -1.69
LIG3-211ENST00000588713 GDI1P31150 447 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 SLC8A1P32418 973 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 LSP1P33241 339 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 KRT9P35527 623 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 PPP1R2P41236 205 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 SOX9P48436 509 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 CDR1P51861 262 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 SLC8A3P57103 927 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 TLE3Q04726 772 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 SSRP1Q08945 709 aaKnown RBP4.47□□□□□ -1.69
LIG3-211ENST00000588713 C2orf54Q08AI8 447 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 PDCLQ13371 301 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 KCNJ12Q14500 433 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 ZKSCAN8Q15776 578 aaPredicted RBP4.47□□□□□ -1.69
LIG3-211ENST00000588713 GRIK4Q16099 956 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 SNCBQ16143 134 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 TMEM132AQ24JP5 1023 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 C11orf91Q3C1V1 193 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 USH1GQ495M9 461 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 CCDC40Q4G0X9 1142 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 CCDC157Q569K6 752 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 TTMPQ5BVD1 217 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 TCP11X2Q5H9J9 407 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 WDR44Q5JSH3 913 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 CLLU1OSQ5K130 101 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 CCDC122Q5T0U0 273 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 ARHGEF16Q5VV41 709 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 TANGO2Q6ICL3 276 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 RCSD1Q6JBY9 416 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 C8orf74Q6P047 294 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 PDXDC2PQ6P474 469 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 PKN3Q6P5Z2 889 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 LRIG3Q6UXM1 1119 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 SND1Q7KZF4 910 aaKnown RBP eCLIP4.47□□□□□ -1.69
LIG3-211ENST00000588713 KIAA1328Q86T90 577 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 BPHLQ86WA6 291 aaPredicted RBP4.47□□□□□ -1.69
LIG3-211ENST00000588713 MICU3Q86XE3 530 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 TBC1D10CQ8IV04 446 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 DIS3L2Q8IYB7 885 aaKnown RBP4.47□□□□□ -1.69
LIG3-211ENST00000588713 GSPT2Q8IYD1 628 aaKnown RBP4.47□□□□□ -1.69
LIG3-211ENST00000588713 CCDC13Q8IYE1 715 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 MYCBPAPQ8TBZ2 947 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 NSUN6Q8TEA1 469 aaKnown RBP4.47□□□□□ -1.69
LIG3-211ENST00000588713 ZNF473Q8WTR7 871 aaKnown RBP4.47□□□□□ -1.69
LIG3-211ENST00000588713 N4BP2L2Q92802 583 aaPredicted RBP4.47□□□□□ -1.69
LIG3-211ENST00000588713 OSBP2Q969R2 916 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 MIEF2Q96C03 454 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 MCRS1Q96EZ8 462 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 NAF1Q96HR8 494 aaKnown RBP4.47□□□□□ -1.69
LIG3-211ENST00000588713 SGSM3Q96HU1 749 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 ZNF512BQ96KM6 892 aaPredicted RBP4.47□□□□□ -1.69
LIG3-211ENST00000588713 ALS2CR12Q96Q35 445 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 NUP58Q9BVL2 599 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 VN1R3Q9BXE9 311 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 CELF4Q9BZC1 486 aaKnown RBP4.47□□□□□ -1.69
LIG3-211ENST00000588713 TTYH3Q9C0H2 523 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 RANBP17Q9H2T7 1088 aaKnown RBP4.47□□□□□ -1.69
LIG3-211ENST00000588713 KDM4CQ9H3R0 1056 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 FZD8Q9H461 694 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 THAP9Q9H5L6 903 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 CNNM2Q9H8M5 875 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 MAGEF1Q9HAY2 307 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 LY9Q9HBG7 655 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 MKNK2Q9HBH9 465 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 CPNE5Q9HCH3 593 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 STIM2Q9P246 746 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 RNF14Q9UBS8 474 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 PLEKHB1Q9UF11 243 aaPredicted RBP4.47□□□□□ -1.69
LIG3-211ENST00000588713 CAPN11Q9UMQ6 739 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 SNX12Q9UMY4 172 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 AK5Q9Y6K8 562 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 SQORQ9Y6N5 450 aa4.47□□□□□ -1.69
LIG3-211ENST00000588713 KIF26AQ9ULI4 1882 aaPredicted RBP4.47□□□□□ -1.69
LIG3-211ENST00000588713 ATP8B3O60423 1300 aa4.46□□□□□ -1.69
LIG3-211ENST00000588713 ABCB11O95342 1321 aa4.46□□□□□ -1.69
LIG3-211ENST00000588713 SPAG17Q6Q759 2223 aa4.46□□□□□ -1.69
LIG3-211ENST00000588713 ZFHX3Q15911 3703 aa4.46□□□□□ -1.69
LIG3-211ENST00000588713 CCDC163A0A0D9SF12 145 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 CCDC189A1A4V9 331 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 GRID2IPA4D2P6 1211 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 C5orf60A6NFR6 353 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 SLC38A8A6NNN8 435 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 ANKRD65E5RJM6 399 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 MYO1FO00160 1098 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms