RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 BHMG1C9JSJ3 638 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-229ENST00000557348 PIRO00625 290 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 FSCN2O14926 492 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 FAM107AO95990 144 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 PGK1P00558 417 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 GLI1P08151 1106 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 CFHP08603 1231 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 PYGMP11217 842 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 SKIP12755 728 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 TAF6P49848 677 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 NDST1P52848 882 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 DRG2P55039 364 aaKnown RBP13.34□□□□□ -0.27
SHMT2-229ENST00000557348 CDH8P55286 799 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 ZNF200P98182 395 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-229ENST00000557348 DR1Q01658 176 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 ACTN3Q08043 901 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-229ENST00000557348 CRYMQ14894 314 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 PPP1R15BQ5SWA1 713 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 GRK7Q8WTQ7 553 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 BTBD6Q96KE9 485 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 ZIC5Q96T25 663 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 TRAIPQ9BWF2 469 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 DDX47Q9H0S4 455 aaKnown RBP13.34□□□□□ -0.27
SHMT2-229ENST00000557348 HESX1Q9UBX0 185 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 MOXD2PA6NHM9 499 aa13.33□□□□□ -0.28
SHMT2-229ENST00000557348 M0QYV0 167 aa13.33□□□□□ -0.28
SHMT2-229ENST00000557348 CITO14578 2027 aa13.33□□□□□ -0.28
SHMT2-229ENST00000557348 MICAL2O94851 1124 aa13.33□□□□□ -0.28
SHMT2-229ENST00000557348 ASGR1P07306 291 aa13.33□□□□□ -0.28
SHMT2-229ENST00000557348 LRPAP1P30533 357 aa13.33□□□□□ -0.28
SHMT2-229ENST00000557348 PTK7Q13308 1070 aa13.33□□□□□ -0.28
SHMT2-229ENST00000557348 ZNF211Q13398 564 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-229ENST00000557348 ODF2Q5BJF6 829 aa13.33□□□□□ -0.28
SHMT2-229ENST00000557348 MAP3K21Q5TCX8 1036 aa13.33□□□□□ -0.28
SHMT2-229ENST00000557348 GDF6Q6KF10 455 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-229ENST00000557348 DENND1BQ6P3S1 775 aa13.33□□□□□ -0.28
SHMT2-229ENST00000557348 SND1Q7KZF4 910 aaKnown RBP eCLIP13.33□□□□□ -0.282e-6■■□□□ 11.8
SHMT2-229ENST00000557348 ZDHHC17Q8IUH5 632 aa13.33□□□□□ -0.28
SHMT2-229ENST00000557348 RCOR2Q8IZ40 523 aa13.33□□□□□ -0.28
SHMT2-229ENST00000557348 IQCKQ8N0W5 287 aa13.33□□□□□ -0.28
SHMT2-229ENST00000557348 STK32AQ8WU08 396 aa13.33□□□□□ -0.28
SHMT2-229ENST00000557348 HDAC7Q8WUI4 952 aa13.33□□□□□ -0.28
SHMT2-229ENST00000557348 SLCO2A1Q92959 643 aa13.33□□□□□ -0.28
SHMT2-229ENST00000557348 LRRC45Q96CN5 670 aa13.33□□□□□ -0.28
SHMT2-229ENST00000557348 TNIP3Q96KP6 325 aa13.33□□□□□ -0.28
SHMT2-229ENST00000557348 ZMAT2Q96NC0 199 aaKnown RBP13.33□□□□□ -0.28
SHMT2-229ENST00000557348 MCEEQ96PE7 176 aa13.33□□□□□ -0.28
SHMT2-229ENST00000557348 TSEN34Q9BSV6 310 aaKnown RBP13.33□□□□□ -0.28
SHMT2-229ENST00000557348 LRRC19Q9H756 370 aa13.33□□□□□ -0.28
SHMT2-229ENST00000557348 CYLDQ9NQC7 956 aa13.33□□□□□ -0.28
SHMT2-229ENST00000557348 CHORDC1Q9UHD1 332 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-229ENST00000557348 DDX20Q9UHI6 824 aaKnown RBP13.33□□□□□ -0.28
SHMT2-229ENST00000557348 SNX9Q9Y5X1 595 aa13.33□□□□□ -0.28
SHMT2-229ENST00000557348 CAPN7Q9Y6W3 813 aa13.33□□□□□ -0.28
SHMT2-229ENST00000557348 ZMYND10O75800 440 aa13.32□□□□□ -0.28
SHMT2-229ENST00000557348 RASSF9O75901 435 aa13.32□□□□□ -0.28
SHMT2-229ENST00000557348 KRT7P08729 469 aa13.32□□□□□ -0.28
SHMT2-229ENST00000557348 KRT3P12035 628 aa13.32□□□□□ -0.28
SHMT2-229ENST00000557348 PTPN7P35236 360 aa13.32□□□□□ -0.28
SHMT2-229ENST00000557348 MARCKSL1P49006 195 aa13.32□□□□□ -0.28
SHMT2-229ENST00000557348 PDCLQ13371 301 aa13.32□□□□□ -0.28
SHMT2-229ENST00000557348 MTMR3Q13615 1198 aa13.32□□□□□ -0.28
SHMT2-229ENST00000557348 KCNA10Q16322 511 aa13.32□□□□□ -0.28
SHMT2-229ENST00000557348 HADHQ16836 314 aaKnown RBP13.32□□□□□ -0.28
SHMT2-229ENST00000557348 SPDYCQ5MJ68 293 aa13.32□□□□□ -0.28
SHMT2-229ENST00000557348 ARHGAP17Q68EM7 881 aa13.32□□□□□ -0.28
SHMT2-229ENST00000557348 WDTC1Q8N5D0 677 aa13.32□□□□□ -0.28
SHMT2-229ENST00000557348 TOP6BLQ8N6T0 577 aa13.32□□□□□ -0.28
SHMT2-229ENST00000557348 GPATCH11Q8N954 259 aa13.32□□□□□ -0.28
SHMT2-229ENST00000557348 MAGOHBQ96A72 148 aaKnown RBP13.32□□□□□ -0.28
SHMT2-229ENST00000557348 DDX27Q96GQ7 796 aaKnown RBP13.32□□□□□ -0.28
SHMT2-229ENST00000557348 UBN1Q9NPG3 1134 aa13.32□□□□□ -0.28
SHMT2-229ENST00000557348 TUBGCP4Q9UGJ1 667 aa13.32□□□□□ -0.28
SHMT2-229ENST00000557348 AMACRQ9UHK6 382 aa13.32□□□□□ -0.28
SHMT2-229ENST00000557348 GIT1Q9Y2X7 761 aa13.32□□□□□ -0.28
SHMT2-229ENST00000557348 KPNA7A9QM74 516 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 HUS1O60921 280 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 GHRP10912 638 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 ITGA4P13612 1032 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 LSP1P33241 339 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 SCNN1AP37088 669 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 GPD2P43304 727 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 GUCY2FP51841 1108 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 PSMC1P62191 440 aaKnown RBP13.31□□□□□ -0.28
SHMT2-229ENST00000557348 MGAT3Q09327 533 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 HLTFQ14527 1009 aaKnown RBP eCLIP13.31□□□□□ -0.28
SHMT2-229ENST00000557348 PTPN20Q4JDL3 420 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 CFAP58Q5T655 872 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 SCARA3Q6AZY7 606 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 CCSAPQ6IQ19 270 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-229ENST00000557348 SMG8Q8ND04 991 aaKnown RBP13.31□□□□□ -0.28
SHMT2-229ENST00000557348 APPL2Q8NEU8 664 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 SPATA18Q8TC71 538 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 RAET1EQ8TD07 263 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 IFT81Q8WYA0 676 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 MCRS1Q96EZ8 462 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 ERP44Q9BS26 406 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 APOL6Q9BWW8 343 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 SNX25Q9H3E2 840 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 BATF3Q9NR55 127 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms