RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 HMGCRP04035 888 aa13.46□□□□□ -0.26
VIPAS39-206ENST00000553888 KRT3P12035 628 aa13.46□□□□□ -0.26
VIPAS39-206ENST00000553888 KRT10P13645 584 aa13.46□□□□□ -0.26
VIPAS39-206ENST00000553888 KCNE1P15382 129 aa13.46□□□□□ -0.26
VIPAS39-206ENST00000553888 VEGFBP49765 207 aa13.46□□□□□ -0.26
VIPAS39-206ENST00000553888 ITGA7Q13683 1181 aa13.46□□□□□ -0.26
VIPAS39-206ENST00000553888 TAF5Q15542 800 aa13.46□□□□□ -0.26
VIPAS39-206ENST00000553888 SH3PXD2AQ5TCZ1 1133 aa13.46□□□□□ -0.26
VIPAS39-206ENST00000553888 TRNP1Q6NT89 227 aa13.46□□□□□ -0.26
VIPAS39-206ENST00000553888 PMF1Q6P1K2 205 aa13.46□□□□□ -0.26
VIPAS39-206ENST00000553888 CCDC137Q6PK04 289 aaKnown RBP13.46□□□□□ -0.26
VIPAS39-206ENST00000553888 LRRC52Q8N7C0 313 aa13.46□□□□□ -0.26
VIPAS39-206ENST00000553888 NAP1L3Q99457 506 aaPredicted RBP13.46□□□□□ -0.26
VIPAS39-206ENST00000553888 DDX20Q9UHI6 824 aaKnown RBP13.46□□□□□ -0.26
VIPAS39-206ENST00000553888 PADI3Q9ULW8 664 aa13.46□□□□□ -0.26
VIPAS39-206ENST00000553888 ATP2C2O75185 946 aa13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 GABBR2O75899 941 aa13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 ACAT1P24752 427 aaKnown RBP13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 TNFRSF8P28908 595 aa13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 ADORA2BP29275 332 aa13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 PTGIRP43119 386 aa13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 KCNT1Q5JUK3 1230 aa13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 KAZNQ674X7 775 aa13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 RSPH3Q86UC2 560 aa13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 OSTM1Q86WC4 334 aa13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 JAMLQ86YT9 394 aa13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 RHOT1Q8IXI2 618 aa13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 FRMPD3Q5JV73 1810 aa13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 BHMG1C9JSJ3 638 aaPredicted RBP13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 PSMA2P25787 234 aa13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 ACLYP53396 1101 aa13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 PAK2Q13177 524 aa13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 MAP3K21Q5TCX8 1036 aa13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 LCLAT1Q6UWP7 414 aa13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 FAM183BPQ6ZVS7 135 aa13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 CCDC26Q8TAB7 109 aa13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 PPP1R10Q96QC0 940 aaKnown RBP13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 B3GNT5Q9BYG0 378 aa13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 TRPV6Q9H1D0 765 aa13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 ZWILCHQ9H900 591 aa13.45□□□□□ -0.26
VIPAS39-206ENST00000553888 AGPSO00116 658 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 IL1R2P27930 398 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 SCNN1GP51170 649 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 RABGGTBP53611 331 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 LILRA4P59901 499 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 NKX3-2P78367 333 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 FAM102AQ5T9C2 384 aaPredicted RBP13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 AGMOQ6ZNB7 445 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 C3orf58Q8NDZ4 430 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 RAPGEF5Q92565 580 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 FAXDC2Q96IV6 333 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 NOD1Q9Y239 953 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 SNX24Q9Y343 169 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 TIMM13Q9Y5L4 95 aaPredicted RBP13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 CASTOR2A6NHX0 329 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 FSCN2O14926 492 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 INHAP05111 366 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 GGCXP38435 758 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 LPIN1Q14693 890 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 PAN2Q504Q3 1202 aaKnown RBP13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 OR6B2Q6IFH4 312 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 EP400NLQ6ZTU2 488 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 MAATS1Q7Z4T9 603 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 PRUNE1Q86TP1 453 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 CLEC4CQ8WTT0 213 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 RUBCNQ92622 972 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 PCSK1NQ9UHG2 260 aa13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 LAMA2P24043 3122 aaKnown RBP13.44□□□□□ -0.26
VIPAS39-206ENST00000553888 ARL5CA6NH57 179 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 SIGLEC16A6NMB1 481 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 PSTPIP1O43586 416 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 CD4P01730 458 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 KRT1P04264 644 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 COILP38432 576 aaPredicted RBP13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 TAF6P49848 677 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 CLCNKBP51801 687 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 MFSD7Q6UXD7 560 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 CCDC105Q8IYK2 499 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 MIS12Q9H081 205 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 STRIP2Q9ULQ0 834 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 I3L4J1 428 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 LRCH4O75427 683 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 ATF7P17544 494 aaPredicted RBP13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 TKTP29401 623 aaKnown RBP13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 GNL1P36915 607 aaPredicted RBP13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 APLP1P51693 650 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 TRIP13Q15645 432 aaPredicted RBP13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 C15orf59Q2T9L4 293 aaPredicted RBP13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 PPP1R2P3Q6NXS1 205 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 EMBQ6PCB8 327 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 SCUBE3Q8IX30 993 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 KATNAL2Q8IYT4 538 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 HAUS1Q96CS2 278 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 UTP11Q9Y3A2 253 aaKnown RBP13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 CLDN5O00501 218 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 SYF2O95926 243 aaKnown RBP13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 POMCP01189 267 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 CST5P28325 142 aaPredicted RBP13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 CDO1Q16878 200 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms