RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 MTA3Q9BTC8 594 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 CRB3Q9BUF7 120 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 SEMA4AQ9H3S1 761 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 TDRD3Q9H7E2 651 aaKnown RBP4.41□□□□□ -1.7
LIMA1-208ENST00000551691 PANK3Q9H999 370 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 PNPLA8Q9NP80 782 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 CASS4Q9NQ75 786 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 TRMT13Q9NUP7 481 aaKnown RBP4.41□□□□□ -1.7
LIMA1-208ENST00000551691 UCKL1Q9NWZ5 548 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 PALD1Q9ULE6 856 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 TPCN1Q9ULQ1 816 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 POLHQ9Y253 713 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 CFAP20Q9Y6A4 193 aaKnown RBP4.41□□□□□ -1.7
LIMA1-208ENST00000551691 ZNF804BA4D1E1 1349 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 PKD1L2Q7Z442 2459 aa4.4□□□□□ -1.7
LIMA1-208ENST00000551691 LAMB1P07942 1786 aa4.4□□□□□ -1.7
LIMA1-208ENST00000551691 ANKRD36CQ5JPF3 1778 aa4.4□□□□□ -1.7
LIMA1-208ENST00000551691 DNAH14Q0VDD8 3507 aa4.4□□□□□ -1.7
LIMA1-208ENST00000551691 SH3D21A4FU49 640 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 KPNA5O15131 536 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 NOBOXO60393 691 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 PRLP01236 227 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 ALDH2P05091 517 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 SLC5A1P13866 664 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 CCND3P30281 292 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-208ENST00000551691 CHKAP35790 457 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 RENBPP51606 427 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 ALDH5A1P51649 535 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-208ENST00000551691 RBM5P52756 815 aaKnown RBP eCLIP4.4□□□□□ -1.71
LIMA1-208ENST00000551691 CNGB1Q14028 1251 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-208ENST00000551691 TAF7Q15545 349 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-208ENST00000551691 ELF2Q15723 593 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 PRR16Q569H4 304 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 AKNAD1Q5T1N1 836 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 KRT40Q6A162 431 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 MAEAQ7L5Y9 396 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 B3GNT8Q7Z7M8 397 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 ANKRD23Q86SG2 305 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 TTC7BQ86TV6 843 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 RSPH3Q86UC2 560 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 ERO1BQ86YB8 467 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 OR2C3Q8N628 320 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 CDYL2Q8N8U2 506 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 KLHDC4Q8TBB5 520 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 NRG4Q8WWG1 115 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 GAB3Q8WWW8 586 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 BORCS6Q96GS4 357 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 NOL10Q9BSC4 688 aaKnown RBP4.4□□□□□ -1.71
LIMA1-208ENST00000551691 BHMT2Q9H2M3 363 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 MTG2Q9H4K7 406 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 ARMT1Q9H993 441 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 KIAA1586Q9HCI6 787 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 SPATA6Q9NWH7 488 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-208ENST00000551691 ZNF70Q9UC06 446 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-208ENST00000551691 GJD2Q9UKL4 321 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 L1RE1Q9UN81 338 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 ATP11BQ9Y2G3 1177 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 PCDHB6Q9Y5E3 794 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 CDY2AQ9Y6F7 541 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 LRRC37AA6NMS7 1700 aa4.4□□□□□ -1.71
LIMA1-208ENST00000551691 KMT2BQ9UMN6 2715 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-208ENST00000551691 MGAMO43451 1857 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 PTPRZ1P23471 2315 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-208ENST00000551691 EPG5Q9HCE0 2579 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-208ENST00000551691 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-208ENST00000551691 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-208ENST00000551691 A0A1W2PPL8 197 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 FAM171A2A8MVW0 826 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 GOLGA6L22H0YM25 854 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 H3BUI4 141 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 FOXN3O00409 490 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-208ENST00000551691 ELL2O00472 640 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-208ENST00000551691 SLC16A6O15403 523 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 HTRA2O43464 458 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-208ENST00000551691 GSPT1P15170 499 aaKnown RBP4.39□□□□□ -1.71
LIMA1-208ENST00000551691 RPL17P18621 184 aaKnown RBP4.39□□□□□ -1.71
LIMA1-208ENST00000551691 CYP2B6P20813 491 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 PTGS1P23219 599 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 TNFSF4P23510 183 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 AOAHP28039 575 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 TECP42680 631 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 MAPK9P45984 424 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 RGS3P49796 1198 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 EIF4A1P60842 406 aaKnown RBP4.39□□□□□ -1.71
LIMA1-208ENST00000551691 ICA1Q05084 483 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 PPIL2Q13356 520 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 STARD3Q14849 445 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 MYBPC3Q14896 1274 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 NOMO1Q15155 1222 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 GJC2Q5T442 439 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-208ENST00000551691 L1TD1Q5T7N2 865 aaKnown RBP4.39□□□□□ -1.71
LIMA1-208ENST00000551691 MMS22LQ6ZRQ5 1243 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 RHOT1Q8IXI2 618 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 KIAA0319LQ8IZA0 1049 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 MSL3Q8N5Y2 521 aaKnown RBP4.39□□□□□ -1.71
LIMA1-208ENST00000551691 ANKRD13CQ8N6S4 541 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 RIN2Q8WYP3 895 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-208ENST00000551691 TRIB2Q92519 343 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 WRNIP1Q96S55 665 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms