RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 AEBP2Q6ZN18 517 aaPredicted RBP19.21■□□□□ 0.67
LIMA1-208ENST00000551691 CHIC1Q5VXU3 224 aa18.16■□□□□ 0.5
LIMA1-208ENST00000551691 SENP3Q9H4L4 574 aaPredicted RBP16.26■□□□□ 0.19
LIMA1-208ENST00000551691 PHF23Q9BUL5 403 aaPredicted RBP16.12■□□□□ 0.17
LIMA1-208ENST00000551691 FOXD1Q16676 465 aa15.24■□□□□ 0.03
LIMA1-208ENST00000551691 PLPPR3Q6T4P5 718 aa14.49□□□□□ -0.09
LIMA1-208ENST00000551691 PPP6R1Q9UPN7 881 aa14.31□□□□□ -0.12
LIMA1-208ENST00000551691 ADRA2BP18089 450 aa14.28□□□□□ -0.12
LIMA1-208ENST00000551691 PIAS4Q8N2W9 510 aaPredicted RBP14.26□□□□□ -0.13
LIMA1-208ENST00000551691 MSH5O43196 834 aa14.15□□□□□ -0.14
LIMA1-208ENST00000551691 POTEDQ86YR6 584 aa13.9□□□□□ -0.18
LIMA1-208ENST00000551691 MAPK8IP2Q13387 824 aaPredicted RBP13.14□□□□□ -0.31
LIMA1-208ENST00000551691 DMRT2Q9Y5R5 561 aa12.91□□□□□ -0.34
LIMA1-208ENST00000551691 SCAF1Q9H7N4 1312 aaKnown RBP12.89□□□□□ -0.35
LIMA1-208ENST00000551691 PPP4R3CPQ6ZMV5 832 aa12.76□□□□□ -0.37
LIMA1-208ENST00000551691 DCAF8L1A6NGE4 600 aa12.53□□□□□ -0.4
LIMA1-208ENST00000551691 CNKSR2Q8WXI2 1034 aa12.46□□□□□ -0.41
LIMA1-208ENST00000551691 HOXD11P31277 338 aaPredicted RBP12.41□□□□□ -0.42
LIMA1-208ENST00000551691 RNF216Q9NWF9 866 aaPredicted RBP12.33□□□□□ -0.44
LIMA1-208ENST00000551691 CACNB1Q02641 598 aaPredicted RBP12.24□□□□□ -0.45
LIMA1-208ENST00000551691 NCBP3Q53F19 620 aaKnown RBP12.2□□□□□ -0.46
LIMA1-208ENST00000551691 RNF39Q9H2S5 420 aa12.12□□□□□ -0.47
LIMA1-208ENST00000551691 NPM3O75607 178 aaKnown RBP12.11□□□□□ -0.47
LIMA1-208ENST00000551691 KCNA4P22459 653 aa11.93□□□□□ -0.5
LIMA1-208ENST00000551691 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.92□□□□□ -0.5
LIMA1-208ENST00000551691 C1QBPQ07021 282 aaKnown RBP11.89□□□□□ -0.51
LIMA1-208ENST00000551691 DNAJC5BQ9UF47 199 aa11.84□□□□□ -0.51
LIMA1-208ENST00000551691 U3KPZ7 1027 aaPredicted RBP11.67□□□□□ -0.54
LIMA1-208ENST00000551691 SLC4A2P04920 1241 aa11.57□□□□□ -0.56
LIMA1-208ENST00000551691 SPINK5Q9NQ38 1064 aaPredicted RBP11.55□□□□□ -0.56
LIMA1-208ENST00000551691 CAPN15O75808 1086 aa11.5□□□□□ -0.57
LIMA1-208ENST00000551691 DSG3P32926 999 aa11.38□□□□□ -0.59
LIMA1-208ENST00000551691 TRHP20396 242 aaPredicted RBP11.35□□□□□ -0.59
LIMA1-208ENST00000551691 ABCB7O75027 752 aa11.3□□□□□ -0.6
LIMA1-208ENST00000551691 SLC4A1APQ9BWU0 796 aaKnown RBP11.23□□□□□ -0.61
LIMA1-208ENST00000551691 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.2□□□□□ -0.62
LIMA1-208ENST00000551691 HNRNPUL2Q1KMD3 747 aaKnown RBP11.2□□□□□ -0.62
LIMA1-208ENST00000551691 ZNF219Q9P2Y4 722 aaPredicted RBP11.2□□□□□ -0.62
LIMA1-208ENST00000551691 APLP2Q06481 763 aa11.19□□□□□ -0.62
LIMA1-208ENST00000551691 SAMD1Q6SPF0 538 aaPredicted RBP11.18□□□□□ -0.62
LIMA1-208ENST00000551691 MYCNP04198 464 aaPredicted RBP11.14□□□□□ -0.63
LIMA1-208ENST00000551691 FOXD4L1Q9NU39 408 aa11.06□□□□□ -0.64
LIMA1-208ENST00000551691 ATF5Q9Y2D1 282 aaPredicted RBP11.01□□□□□ -0.65
LIMA1-208ENST00000551691 POLA2Q14181 598 aa11□□□□□ -0.65
LIMA1-208ENST00000551691 ZBTB22O15209 634 aa10.99□□□□□ -0.65
LIMA1-208ENST00000551691 POTEHQ6S545 545 aa10.88□□□□□ -0.67
LIMA1-208ENST00000551691 RBM42Q9BTD8 480 aaKnown RBP10.78□□□□□ -0.68
LIMA1-208ENST00000551691 OSCARQ8IYS5 282 aa10.69□□□□□ -0.7
LIMA1-208ENST00000551691 ZBTB12Q9Y330 459 aaPredicted RBP10.64□□□□□ -0.71
LIMA1-208ENST00000551691 ATXN8OSP0DMR3 200 aa10.62□□□□□ -0.71
LIMA1-208ENST00000551691 CHRDL2Q6WN34 429 aa10.62□□□□□ -0.71
LIMA1-208ENST00000551691 AKT1S1Q96B36 256 aa10.56□□□□□ -0.72
LIMA1-208ENST00000551691 REM2Q8IYK8 340 aaPredicted RBP10.52□□□□□ -0.73
LIMA1-208ENST00000551691 FBLN2P98095 1184 aa10.47□□□□□ -0.73
LIMA1-208ENST00000551691 MKRN4PQ13434 485 aaPredicted RBP10.46□□□□□ -0.73
LIMA1-208ENST00000551691 CSRNP3Q8WYN3 585 aa10.46□□□□□ -0.73
LIMA1-208ENST00000551691 EHMT2Q96KQ7 1210 aa10.44□□□□□ -0.74
LIMA1-208ENST00000551691 PITPNM1O00562 1244 aa10.43□□□□□ -0.74
LIMA1-208ENST00000551691 PIP4P2Q8N4L2 257 aa10.39□□□□□ -0.75
LIMA1-208ENST00000551691 SPDYE2BA6NHP3 402 aa10.37□□□□□ -0.75
LIMA1-208ENST00000551691 SPDYE6P0CI01 402 aa10.37□□□□□ -0.75
LIMA1-208ENST00000551691 SPDYE2Q495Y8 402 aa10.37□□□□□ -0.75
LIMA1-208ENST00000551691 ZNF692Q9BU19 519 aaPredicted RBP10.31□□□□□ -0.76
LIMA1-208ENST00000551691 CLEC11AQ9Y240 323 aa10.29□□□□□ -0.76
LIMA1-208ENST00000551691 FXR2P51116 673 aaKnown RBP eCLIP10.28□□□□□ -0.76
LIMA1-208ENST00000551691 SSUH2Q9Y2M2 353 aa10.24□□□□□ -0.77
LIMA1-208ENST00000551691 HAX1O00165 279 aa10.22□□□□□ -0.77
LIMA1-208ENST00000551691 SPDYE1Q8NFV5 336 aaPredicted RBP10.2□□□□□ -0.78
LIMA1-208ENST00000551691 SP7Q8TDD2 431 aaPredicted RBP10.19□□□□□ -0.78
LIMA1-208ENST00000551691 PABPN1Q86U42 306 aaKnown RBP eCLIP10.18□□□□□ -0.78
LIMA1-208ENST00000551691 PRKAR2AP13861 404 aaKnown RBP10.16□□□□□ -0.78
LIMA1-208ENST00000551691 EVX2Q03828 476 aa10.14□□□□□ -0.79
LIMA1-208ENST00000551691 CHADLQ6NUI6 762 aa10.13□□□□□ -0.79
LIMA1-208ENST00000551691 PRR29P0C7W0 189 aa10.06□□□□□ -0.8
LIMA1-208ENST00000551691 C19orf67A6NJJ6 358 aa9.96□□□□□ -0.82
LIMA1-208ENST00000551691 SPDYE4A6NLX3 237 aa9.95□□□□□ -0.82
LIMA1-208ENST00000551691 FARP1Q9Y4F1 1045 aaPredicted RBP9.88□□□□□ -0.83
LIMA1-208ENST00000551691 GABBR2O75899 941 aa9.84□□□□□ -0.83
LIMA1-208ENST00000551691 CD44P16070 742 aaKnown RBP9.84□□□□□ -0.83
LIMA1-208ENST00000551691 CREBZFQ9NS37 354 aa9.82□□□□□ -0.84
LIMA1-208ENST00000551691 STAG3Q9UJ98 1225 aa9.78□□□□□ -0.84
LIMA1-208ENST00000551691 ZRANB1Q9UGI0 708 aa9.71□□□□□ -0.86
LIMA1-208ENST00000551691 POTEIP0CG38 1075 aa9.67□□□□□ -0.86
LIMA1-208ENST00000551691 MNX1P50219 401 aaPredicted RBP9.63□□□□□ -0.87
LIMA1-208ENST00000551691 PROM2Q8N271 834 aa9.63□□□□□ -0.87
LIMA1-208ENST00000551691 ZNF579Q8NAF0 562 aaKnown RBP9.63□□□□□ -0.87
LIMA1-208ENST00000551691 PHF12Q96QT6 1004 aa9.63□□□□□ -0.87
LIMA1-208ENST00000551691 GALR2O43603 387 aaPredicted RBP9.6□□□□□ -0.87
LIMA1-208ENST00000551691 NPM1P06748 294 aaKnown RBP eCLIP9.58□□□□□ -0.88
LIMA1-208ENST00000551691 LHX8Q68G74 356 aa9.58□□□□□ -0.88
LIMA1-208ENST00000551691 DCBLD2Q96PD2 775 aa9.58□□□□□ -0.88
LIMA1-208ENST00000551691 PAK3O75914 559 aaPredicted RBP9.57□□□□□ -0.88
LIMA1-208ENST00000551691 TSPYL2Q9H2G4 693 aaPredicted RBP9.53□□□□□ -0.88
LIMA1-208ENST00000551691 FKBP8Q14318 412 aa9.52□□□□□ -0.89
LIMA1-208ENST00000551691 MIER1Q8N108 512 aa9.51□□□□□ -0.89
LIMA1-208ENST00000551691 CLCN6P51797 869 aa9.49□□□□□ -0.89
LIMA1-208ENST00000551691 MS4A3Q96HJ5 214 aa9.47□□□□□ -0.89
LIMA1-208ENST00000551691 PLCD3Q8N3E9 789 aa9.44□□□□□ -0.9
LIMA1-208ENST00000551691 RASEFQ8IZ41 740 aa9.42□□□□□ -0.9
LIMA1-208ENST00000551691 PELP1Q8IZL8 1130 aaKnown RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms