RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 ARHGEF37A1IGU5 675 aa13.83□□□□□ -0.2
CCDC42-202ENST00000539522 FOXN3O00409 490 aaPredicted RBP13.83□□□□□ -0.2
CCDC42-202ENST00000539522 BEST1O76090 585 aa13.83□□□□□ -0.2
CCDC42-202ENST00000539522 PTMAP06454 111 aaKnown RBP13.83□□□□□ -0.2
CCDC42-202ENST00000539522 CFHP08603 1231 aa13.83□□□□□ -0.2
CCDC42-202ENST00000539522 TBXAS1P24557 533 aaPredicted RBP13.83□□□□□ -0.2
CCDC42-202ENST00000539522 PCSK1P29120 753 aa13.83□□□□□ -0.2
CCDC42-202ENST00000539522 CLCN1P35523 988 aa13.83□□□□□ -0.2
CCDC42-202ENST00000539522 CETN1Q12798 172 aa13.83□□□□□ -0.2
CCDC42-202ENST00000539522 ARHGAP44Q17R89 818 aa13.83□□□□□ -0.2
CCDC42-202ENST00000539522 HS1BP3Q53T59 392 aa13.83□□□□□ -0.2
CCDC42-202ENST00000539522 CCDC150Q8NCX0 1101 aa13.83□□□□□ -0.2
CCDC42-202ENST00000539522 SLC7A14Q8TBB6 771 aa13.83□□□□□ -0.2
CCDC42-202ENST00000539522 BAP1Q92560 729 aa13.83□□□□□ -0.2
CCDC42-202ENST00000539522 TMEM176AQ96HP8 235 aa13.83□□□□□ -0.2
CCDC42-202ENST00000539522 APOL5Q9BWW9 433 aa13.83□□□□□ -0.2
CCDC42-202ENST00000539522 FAM207AQ9NSI2 230 aaPredicted RBP13.83□□□□□ -0.2
CCDC42-202ENST00000539522 FAM49BQ9NUQ9 324 aa13.83□□□□□ -0.2
CCDC42-202ENST00000539522 CEP72Q9P209 647 aa13.83□□□□□ -0.2
CCDC42-202ENST00000539522 INSL5Q9Y5Q6 135 aa13.83□□□□□ -0.2
CCDC42-202ENST00000539522 ZNF638Q14966 1978 aaKnown RBP13.83□□□□□ -0.2
CCDC42-202ENST00000539522 DENND4CQ5VZ89 1909 aa13.82□□□□□ -0.2
CCDC42-202ENST00000539522 A0A1W2PQC6 194 aa13.82□□□□□ -0.2
CCDC42-202ENST00000539522 GRXCR2A6NFK2 248 aa13.82□□□□□ -0.2
CCDC42-202ENST00000539522 H3BQ06 376 aaPredicted RBP13.82□□□□□ -0.2
CCDC42-202ENST00000539522 ZMYND10O75800 440 aa13.82□□□□□ -0.2
CCDC42-202ENST00000539522 C8AP07357 584 aa13.82□□□□□ -0.2
CCDC42-202ENST00000539522 HAPLN1P10915 354 aaPredicted RBP13.82□□□□□ -0.2
CCDC42-202ENST00000539522 TFF2Q03403 129 aa13.82□□□□□ -0.2
CCDC42-202ENST00000539522 BMS1Q14692 1282 aaKnown RBP13.82□□□□□ -0.2
CCDC42-202ENST00000539522 DRAP1Q14919 205 aaPredicted RBP13.82□□□□□ -0.2
CCDC42-202ENST00000539522 CFAP221Q4G0U5 840 aa13.82□□□□□ -0.2
CCDC42-202ENST00000539522 PPP1R26Q5T8A7 1209 aaPredicted RBP13.82□□□□□ -0.2
CCDC42-202ENST00000539522 SDHAF4Q5VUM1 108 aa13.82□□□□□ -0.2
CCDC42-202ENST00000539522 E4F1Q66K89 784 aaPredicted RBP13.82□□□□□ -0.2
CCDC42-202ENST00000539522 TMEM270Q6UE05 265 aa13.82□□□□□ -0.2
CCDC42-202ENST00000539522 PPFIBP1Q86W92 1011 aa13.82□□□□□ -0.2
CCDC42-202ENST00000539522 GPIHBP1Q8IV16 184 aa13.82□□□□□ -0.2
CCDC42-202ENST00000539522 SPC24Q8NBT2 197 aa13.82□□□□□ -0.2
CCDC42-202ENST00000539522 RBBP8NLQ8NC74 664 aaPredicted RBP13.82□□□□□ -0.2
CCDC42-202ENST00000539522 SLC2A14Q8TDB8 520 aa13.82□□□□□ -0.2
CCDC42-202ENST00000539522 HDAC7Q8WUI4 952 aa13.82□□□□□ -0.2
CCDC42-202ENST00000539522 JAKMIP2Q96AA8 810 aa13.82□□□□□ -0.2
CCDC42-202ENST00000539522 TRIM44Q96DX7 344 aaPredicted RBP13.82□□□□□ -0.2
CCDC42-202ENST00000539522 NT5C1AQ9BXI3 368 aa13.82□□□□□ -0.2
CCDC42-202ENST00000539522 LRRC3Q9BY71 257 aa13.82□□□□□ -0.2
CCDC42-202ENST00000539522 FAM124BQ9H5Z6 455 aaPredicted RBP13.82□□□□□ -0.2
CCDC42-202ENST00000539522 UBE2ZQ9H832 354 aaPredicted RBP13.82□□□□□ -0.2
CCDC42-202ENST00000539522 CYP4F11Q9HBI6 524 aa13.82□□□□□ -0.2
CCDC42-202ENST00000539522 ABI2Q9NYB9 513 aaPredicted RBP13.82□□□□□ -0.2
CCDC42-202ENST00000539522 YIPF1Q9Y548 306 aa13.82□□□□□ -0.2
CCDC42-202ENST00000539522 PCDHB4Q9Y5E5 795 aa13.82□□□□□ -0.2
CCDC42-202ENST00000539522 HHLA1C9JL84 531 aa13.81□□□□□ -0.2
CCDC42-202ENST00000539522 F8VZ95 297 aa13.81□□□□□ -0.2
CCDC42-202ENST00000539522 GABBR2O75899 941 aa13.81□□□□□ -0.2
CCDC42-202ENST00000539522 CLSTN1O94985 981 aa13.81□□□□□ -0.2
CCDC42-202ENST00000539522 BDNFP23560 247 aa13.81□□□□□ -0.2
CCDC42-202ENST00000539522 POLR2FP61218 127 aaKnown RBP13.81□□□□□ -0.2
CCDC42-202ENST00000539522 TSPY1Q01534 308 aa13.81□□□□□ -0.2
CCDC42-202ENST00000539522 CLUL1Q15846 466 aa13.81□□□□□ -0.2
CCDC42-202ENST00000539522 PKDCCQ504Y2 493 aa13.81□□□□□ -0.2
CCDC42-202ENST00000539522 FKBP15Q5T1M5 1219 aa13.81□□□□□ -0.2
CCDC42-202ENST00000539522 FAM35AQ86V20 835 aa13.81□□□□□ -0.2
CCDC42-202ENST00000539522 TTC30AQ86WT1 665 aa13.81□□□□□ -0.2
CCDC42-202ENST00000539522 VSTM4Q8IW00 320 aa13.81□□□□□ -0.2
CCDC42-202ENST00000539522 FAM71AQ8IYT1 594 aa13.81□□□□□ -0.2
CCDC42-202ENST00000539522 DCP1BQ8IZD4 617 aaKnown RBP13.81□□□□□ -0.2
CCDC42-202ENST00000539522 SMRP1Q8NCR6 262 aa13.81□□□□□ -0.2
CCDC42-202ENST00000539522 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.81□□□□□ -0.2
CCDC42-202ENST00000539522 GPR152Q8TDT2 470 aa13.81□□□□□ -0.2
CCDC42-202ENST00000539522 CASP10Q92851 521 aa13.81□□□□□ -0.2
CCDC42-202ENST00000539522 KCNK16Q96T55 309 aa13.81□□□□□ -0.2
CCDC42-202ENST00000539522 HNRNPABQ99729 332 aaKnown RBP13.81□□□□□ -0.2
CCDC42-202ENST00000539522 SMOQ99835 787 aa13.81□□□□□ -0.2
CCDC42-202ENST00000539522 PLEKHA4Q9H4M7 779 aa13.81□□□□□ -0.2
CCDC42-202ENST00000539522 NLRC4Q9NPP4 1024 aa13.81□□□□□ -0.2
CCDC42-202ENST00000539522 HCFC1R1Q9NWW0 138 aa13.81□□□□□ -0.2
CCDC42-202ENST00000539522 HSFX1Q9UBD0 423 aa13.81□□□□□ -0.2
CCDC42-202ENST00000539522 PCDHB5Q9Y5E4 795 aa13.81□□□□□ -0.2
CCDC42-202ENST00000539522 ANAPC1Q9H1A4 1944 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 MYH10P35580 1976 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 TULP2O00295 520 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 O00370 1275 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 CCL16O15467 120 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 CYP26A1O43174 497 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 BRD2P25440 801 aaKnown RBP13.8□□□□□ -0.2
CCDC42-202ENST00000539522 SSTR3P32745 418 aaPredicted RBP13.8□□□□□ -0.2
CCDC42-202ENST00000539522 MFAP3P55082 362 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 NTHL1P78549 312 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 CYP27A1Q02318 531 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 TWF1Q12792 350 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 MTMR3Q13615 1198 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 DDR2Q16832 855 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 RARS2Q5T160 578 aaKnown RBP13.8□□□□□ -0.2
CCDC42-202ENST00000539522 ARHGAP17Q68EM7 881 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 SPECC1LQ69YQ0 1117 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 TMC5Q6UXY8 1006 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 ENOSF1Q7L5Y1 443 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 TMC6Q7Z403 805 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 SLC47A2Q86VL8 602 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms