RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 EFCAB13Q8IY85 973 aa9.96□□□□□ -0.81
USP28-205ENST00000537706 ZNF248Q8NDW4 579 aa9.96□□□□□ -0.81
USP28-205ENST00000537706 KCNV2Q8TDN2 545 aa9.96□□□□□ -0.81
USP28-205ENST00000537706 C2orf15Q8WU43 125 aaKnown RBP9.96□□□□□ -0.81
USP28-205ENST00000537706 ACAP3Q96P50 834 aa9.96□□□□□ -0.81
USP28-205ENST00000537706 SEMA4CQ9C0C4 833 aa9.96□□□□□ -0.81
USP28-205ENST00000537706 TRPC7Q9HCX4 862 aa9.96□□□□□ -0.81
USP28-205ENST00000537706 CALCOCO1Q9P1Z2 691 aa9.96□□□□□ -0.81
USP28-205ENST00000537706 NFE2L3Q9Y4A8 694 aa9.96□□□□□ -0.81
USP28-205ENST00000537706 RBM19Q9Y4C8 960 aaKnown RBP9.96□□□□□ -0.81
USP28-205ENST00000537706 PCDHGA1Q9Y5H4 931 aa9.96□□□□□ -0.81
USP28-205ENST00000537706 KIF26AQ9ULI4 1882 aaPredicted RBP9.96□□□□□ -0.82
USP28-205ENST00000537706 KLF18A0A0U1RQI7 1052 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 M0QZQ0 153 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 ADAMTS3O15072 1205 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 TYMPP19971 482 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 GRIA2P42262 883 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 ZNF77Q15935 545 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 HLA-BQ31612 363 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 C4orf17Q53FE4 359 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 ATG14Q6ZNE5 492 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 DBX2Q6ZNG2 339 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 MAEAQ7L5Y9 396 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 GIPC2Q8TF65 315 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 TRIM4Q9C037 500 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 MIR1-1HGQ9H1L0 117 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 SH3GLB2Q9NR46 395 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 KCNK4Q9NYG8 393 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 TIMM13Q9Y5L4 95 aaPredicted RBP9.95□□□□□ -0.82
USP28-205ENST00000537706 HECTD1Q9ULT8 2610 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 TNRC6BQ9UPQ9 1833 aaKnown RBP9.95□□□□□ -0.82
USP28-205ENST00000537706 PTPRBP23467 1997 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 NID2Q14112 1375 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 ZBTB39O15060 712 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 EDIL3O43854 480 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 KAT7O95251 611 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 LYPLA2O95372 231 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 CKMP06732 381 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 C1SP09871 688 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 CSH1P0DML2 217 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 CSH2P0DML3 217 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 GCFC2P16383 781 aaKnown RBP9.95□□□□□ -0.82
USP28-205ENST00000537706 GABRG2P18507 467 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 CCR10P46092 362 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 RESTQ13127 1097 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 C6orf132Q5T0Z8 1188 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 IFT74Q96LB3 600 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 MTMR9Q96QG7 549 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 IL21RQ9HBE5 538 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 FNDC3AQ9Y2H6 1198 aaKnown RBP9.95□□□□□ -0.82
USP28-205ENST00000537706 SPTA1P02549 2419 aa9.95□□□□□ -0.82
USP28-205ENST00000537706 ATG2BQ96BY7 2078 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 SLC9A3R1O14745 358 aaPredicted RBP9.94□□□□□ -0.82
USP28-205ENST00000537706 F11P03951 625 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 ODC1P11926 461 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 ATP2B1P20020 1258 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 PAX3P23760 479 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 CDC27P30260 824 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 NAMPTP43490 491 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 PCBP4P57723 403 aaKnown RBP9.94□□□□□ -0.82
USP28-205ENST00000537706 OSTNP61366 133 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 DMP1Q13316 513 aaPredicted RBP9.94□□□□□ -0.82
USP28-205ENST00000537706 TEAD4Q15561 434 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 TBC1D25Q3MII6 688 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 ZNF568Q3ZCX4 644 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 ALKAL1Q6UXT8 129 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 SLFN12Q8IYM2 578 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 ZCCHC9Q8N567 271 aaKnown RBP9.94□□□□□ -0.82
USP28-205ENST00000537706 FSIP1Q8NA03 581 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 SPPL2BQ8TCT7 592 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 ARHGEF4Q9NR80 690 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 CNTN3Q9P232 1028 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 PCDHA4Q9UN74 947 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 MAGED2Q9UNF1 606 aaPredicted RBP9.94□□□□□ -0.82
USP28-205ENST00000537706 TNFSF13BQ9Y275 285 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 MUC22E2RYF6 1773 aaPredicted RBP9.94□□□□□ -0.82
USP28-205ENST00000537706 ADAMTS9Q9P2N4 1935 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 BPTFQ12830 3046 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 TTLL13PA6NNM8 815 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 BCAT2O15382 392 aaPredicted RBP9.94□□□□□ -0.82
USP28-205ENST00000537706 SGSM2O43147 1006 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 XPOTO43592 962 aaKnown RBP9.94□□□□□ -0.82
USP28-205ENST00000537706 KRT38O76015 456 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 LARGE1O95461 756 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 XRCC6P12956 609 aaKnown RBP eCLIP9.94□□□□□ -0.82
USP28-205ENST00000537706 HOXB2P14652 356 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 MAOBP27338 520 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 RARRES1P49788 294 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 RIPPLY3P57055 190 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 KCNB1Q14721 858 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 SF3A1Q15459 793 aaKnown RBP9.94□□□□□ -0.82
USP28-205ENST00000537706 PTPRNQ16849 979 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 INF2Q27J81 1249 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 SLC39A12Q504Y0 691 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 METTL23Q86XA0 190 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 TTC9BQ8N6N2 239 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 SH3RF2Q8TEC5 729 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 C18orf25Q96B23 403 aaPredicted RBP9.94□□□□□ -0.82
USP28-205ENST00000537706 KCNMB3Q9NPA1 279 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 GPRC5CQ9NQ84 441 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms