RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 THEGQ9P2T0 379 aa22.07■■□□□ 1.12
CD44-222ENST00000526025 DNAJC12Q9UKB3 198 aa22.07■■□□□ 1.12
CD44-222ENST00000526025 YIPF1Q9Y548 306 aa22.07■■□□□ 1.12
CD44-222ENST00000526025 PCDHB4Q9Y5E5 795 aa22.07■■□□□ 1.12
CD44-222ENST00000526025 PATJQ8NI35 1801 aa22.07■■□□□ 1.12
CD44-222ENST00000526025 COL6A3P12111 3177 aa22.06■■□□□ 1.12
CD44-222ENST00000526025 XYLBO75191 536 aa22.06■■□□□ 1.12
CD44-222ENST00000526025 SMAD4Q13485 552 aaKnown RBP22.06■■□□□ 1.12
CD44-222ENST00000526025 AAK1Q2M2I8 961 aa22.06■■□□□ 1.12
CD44-222ENST00000526025 CES5AQ6NT32 575 aa22.06■■□□□ 1.12
CD44-222ENST00000526025 TMEM270Q6UE05 265 aa22.06■■□□□ 1.12
CD44-222ENST00000526025 EP400NLQ6ZTU2 488 aa22.06■■□□□ 1.12
CD44-222ENST00000526025 GPR149Q86SP6 731 aa22.06■■□□□ 1.12
CD44-222ENST00000526025 RNF214Q8ND24 703 aa22.06■■□□□ 1.12
CD44-222ENST00000526025 ZNF707Q96C28 371 aaPredicted RBP22.06■■□□□ 1.12
CD44-222ENST00000526025 NAP1L5Q96NT1 182 aaPredicted RBP22.06■■□□□ 1.12
CD44-222ENST00000526025 HNRNPABQ99729 332 aaKnown RBP22.06■■□□□ 1.12
CD44-222ENST00000526025 B3GNT5Q9BYG0 378 aa22.06■■□□□ 1.12
CD44-222ENST00000526025 GANQ9H2C0 597 aa22.06■■□□□ 1.12
CD44-222ENST00000526025 ASB3Q9Y575 518 aa22.06■■□□□ 1.12
CD44-222ENST00000526025 CCDC195A0A1B0GUA6 201 aa22.05■■□□□ 1.12
CD44-222ENST00000526025 TEX33O43247 280 aa22.05■■□□□ 1.12
CD44-222ENST00000526025 RFPL2O75678 378 aa22.05■■□□□ 1.12
CD44-222ENST00000526025 NOL4O94818 638 aa22.05■■□□□ 1.12
CD44-222ENST00000526025 LRG1P02750 347 aa22.05■■□□□ 1.12
CD44-222ENST00000526025 ALDH1A3P47895 512 aa22.05■■□□□ 1.12
CD44-222ENST00000526025 UBASH3AP57075 661 aa22.05■■□□□ 1.12
CD44-222ENST00000526025 RPL10AP62906 217 aaKnown RBP22.05■■□□□ 1.12
CD44-222ENST00000526025 CYP27A1Q02318 531 aa22.05■■□□□ 1.12
CD44-222ENST00000526025 APBA1Q02410 837 aa22.05■■□□□ 1.12
CD44-222ENST00000526025 CCDC142Q17RM4 750 aa22.05■■□□□ 1.12
CD44-222ENST00000526025 RARS2Q5T160 578 aaKnown RBP22.05■■□□□ 1.12
CD44-222ENST00000526025 ARHGAP17Q68EM7 881 aa22.05■■□□□ 1.12
CD44-222ENST00000526025 IQCEQ6IPM2 695 aa22.05■■□□□ 1.12
CD44-222ENST00000526025 GJB7Q6PEY0 223 aa22.05■■□□□ 1.12
CD44-222ENST00000526025 FUKQ8N0W3 1084 aa22.05■■□□□ 1.12
CD44-222ENST00000526025 SUSD6Q92537 303 aa22.05■■□□□ 1.12
CD44-222ENST00000526025 SMARCD1Q96GM5 515 aa22.05■■□□□ 1.12
CD44-222ENST00000526025 NECTIN4Q96NY8 510 aa22.05■■□□□ 1.12
CD44-222ENST00000526025 SLC27A5Q9Y2P5 690 aa22.05■■□□□ 1.12
CD44-222ENST00000526025 DOCK6Q96HP0 2047 aa22.04■■□□□ 1.12
CD44-222ENST00000526025 NOTCH4Q99466 2003 aa22.04■■□□□ 1.12
CD44-222ENST00000526025 PRUNE2Q8WUY3 3088 aa22.04■■□□□ 1.12
CD44-222ENST00000526025 H3BQ06 376 aaPredicted RBP22.04■■□□□ 1.12
CD44-222ENST00000526025 TPM3P06753 285 aa22.04■■□□□ 1.12
CD44-222ENST00000526025 CYP2F1P24903 491 aa22.04■■□□□ 1.12
CD44-222ENST00000526025 MTHFRP42898 656 aa22.04■■□□□ 1.12
CD44-222ENST00000526025 EPHB3P54753 998 aa22.04■■□□□ 1.12
CD44-222ENST00000526025 TWF1Q12792 350 aa22.04■■□□□ 1.12
CD44-222ENST00000526025 ORC1Q13415 861 aa22.04■■□□□ 1.12
CD44-222ENST00000526025 STILQ15468 1287 aa22.04■■□□□ 1.12
CD44-222ENST00000526025 MGAT5BQ3V5L5 792 aa22.04■■□□□ 1.12
CD44-222ENST00000526025 ZNF394Q53GI3 561 aa22.04■■□□□ 1.12
CD44-222ENST00000526025 FAM35AQ86V20 835 aa22.04■■□□□ 1.12
CD44-222ENST00000526025 ELMOD1Q8N336 334 aa22.04■■□□□ 1.12
CD44-222ENST00000526025 TTC9BQ8N6N2 239 aa22.04■■□□□ 1.12
CD44-222ENST00000526025 C12orf76Q8N812 135 aaPredicted RBP22.04■■□□□ 1.12
CD44-222ENST00000526025 RBBP8NLQ8NC74 664 aaPredicted RBP22.04■■□□□ 1.12
CD44-222ENST00000526025 NEK11Q8NG66 645 aa22.04■■□□□ 1.12
CD44-222ENST00000526025 CYFIP2Q96F07 1278 aa22.04■■□□□ 1.12
CD44-222ENST00000526025 SPATA17Q96L03 361 aa22.04■■□□□ 1.12
CD44-222ENST00000526025 C8orf48Q96LL4 319 aa22.04■■□□□ 1.12
CD44-222ENST00000526025 HEXIM2Q96MH2 286 aaKnown RBP22.04■■□□□ 1.12
CD44-222ENST00000526025 RIPOR3Q96MK2 946 aa22.04■■□□□ 1.12
CD44-222ENST00000526025 SEPT5Q99719 369 aaPredicted RBP22.04■■□□□ 1.12
CD44-222ENST00000526025 STK33Q9BYT3 514 aa22.04■■□□□ 1.12
CD44-222ENST00000526025 AVENQ9NQS1 362 aaPredicted RBP22.04■■□□□ 1.12
CD44-222ENST00000526025 FAM207AQ9NSI2 230 aaPredicted RBP22.04■■□□□ 1.12
CD44-222ENST00000526025 FAM50BQ9Y247 325 aa22.04■■□□□ 1.12
CD44-222ENST00000526025 FHOD1Q9Y613 1164 aa22.04■■□□□ 1.12
CD44-222ENST00000526025 ZNF638Q14966 1978 aaKnown RBP22.03■■□□□ 1.12
CD44-222ENST00000526025 TRIM66O15016 1216 aa22.03■■□□□ 1.12
CD44-222ENST00000526025 VDRP11473 427 aa22.03■■□□□ 1.12
CD44-222ENST00000526025 ARHGAP44Q17R89 818 aa22.03■■□□□ 1.12
CD44-222ENST00000526025 TMC5Q6UXY8 1006 aa22.03■■□□□ 1.12
CD44-222ENST00000526025 PAQR9Q6ZVX9 377 aa22.03■■□□□ 1.12
CD44-222ENST00000526025 ITIH5Q86UX2 942 aa22.03■■□□□ 1.12
CD44-222ENST00000526025 C12orf29Q8N999 325 aa22.03■■□□□ 1.12
CD44-222ENST00000526025 LEMD2Q8NC56 503 aa22.03■■□□□ 1.12
CD44-222ENST00000526025 SLC2A14Q8TDB8 520 aa22.03■■□□□ 1.12
CD44-222ENST00000526025 ATXN2LQ8WWM7 1075 aaKnown RBP22.03■■□□□ 1.12
CD44-222ENST00000526025 SMG7Q92540 1137 aaKnown RBP22.03■■□□□ 1.12
CD44-222ENST00000526025 LPIN3Q9BQK8 851 aa22.03■■□□□ 1.12
CD44-222ENST00000526025 CBFA2T2O43439 604 aa22.02■■□□□ 1.12
CD44-222ENST00000526025 MBTPS2O43462 519 aa22.02■■□□□ 1.12
CD44-222ENST00000526025 ATF6P18850 670 aa22.02■■□□□ 1.12
CD44-222ENST00000526025 BDNFP23560 247 aa22.02■■□□□ 1.12
CD44-222ENST00000526025 PBX1P40424 430 aa22.02■■□□□ 1.12
CD44-222ENST00000526025 KLK7P49862 253 aa22.02■■□□□ 1.12
CD44-222ENST00000526025 VEPH1Q14D04 833 aa22.02■■□□□ 1.12
CD44-222ENST00000526025 MEA1Q16626 185 aa22.02■■□□□ 1.12
CD44-222ENST00000526025 SGO2Q562F6 1265 aa22.02■■□□□ 1.12
CD44-222ENST00000526025 ATAT1Q5SQI0 421 aa22.02■■□□□ 1.12
CD44-222ENST00000526025 SARM1Q6SZW1 724 aa22.02■■□□□ 1.12
CD44-222ENST00000526025 FAM71AQ8IYT1 594 aa22.02■■□□□ 1.12
CD44-222ENST00000526025 IQCDQ96DY2 449 aa22.02■■□□□ 1.12
CD44-222ENST00000526025 PCMTD1Q96MG8 357 aaPredicted RBP22.02■■□□□ 1.12
CD44-222ENST00000526025 ZNF518BQ9C0D4 1074 aa22.02■■□□□ 1.12
CD44-222ENST00000526025 GPR88Q9GZN0 384 aa22.02■■□□□ 1.12
CD44-222ENST00000526025 RBSNQ9H1K0 784 aa22.02■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms